Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J15
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   4.1  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   7.2  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    26   7.2  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   7.2  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   9.5  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 531 IFTICKLKTLYFQYFRANIFLMCFM*QNTK*LCICAFGIYLFSKAHKL 388
           +F + ++  +YF  F    FL  F       LC+C F  +LFS +H L
Sbjct: 136 LFFLSQIFIVYFSSFPILHFLFFFF------LCVCVFLSFLFSLSHLL 177


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 638 NRLINN*FTTFQYFKCI 588
           NRL N+ FT  +YFKC+
Sbjct: 816 NRLGNDCFTALEYFKCL 832


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 367 RTGHEHYVNSIFSLIHDV 314
           R+ HE   N +FS +HD+
Sbjct: 851 RSAHESSANKLFSFVHDI 868


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 756 KVXEXLNNDVINFYMCHIERYVTQKFKNLDRMPKI 652
           KV + +N + +  Y+  ++R V  +  NLD MP I
Sbjct: 310 KVFKYINTNNVWLYLPAVKRVVENRELNLDIMPNI 344


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 641 WLFNIFGILSKFLNFCVTY 697
           WLF++ G+L     FC+ Y
Sbjct: 55  WLFSVLGVLMSMDVFCILY 73


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 212 FVSRDNGEFCLNTFDTYYS 268
           ++ RD G + +N FDTYY+
Sbjct: 304 WLQRDFGLYVVNLFDTYYA 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,800
Number of Sequences: 5004
Number of extensions: 57276
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)