Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_J13
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 250 1e-67
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 246 3e-66
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 104 2e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 9e-08
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 32 0.11
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 29 1.0
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 9.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 250 bits (613), Expect = 1e-67
Identities = 114/158 (72%), Positives = 131/158 (82%)
Frame = -1
Query: 603 HEQLSVAEITKRMXRARPTRW*NATPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 424
HE SV EIT + + PR G+YMA C+LYRGDV+P+DV AA+ +IK++RTI
Sbjct: 287 HESNSVQEITNQCFEPY-NQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTI 345
Query: 423 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 244
QFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+K
Sbjct: 346 QFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSK 405
Query: 243 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 130
RAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 406 RAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = -2
Query: 674 VPYPRIHFPLVTYAPVXSXREXLPMNSFPSPRSXNAXFEP 555
VPYPRIHFPLVTY+P+ S + S N FEP
Sbjct: 264 VPYPRIHFPLVTYSPIVSAAKAF-HESNSVQEITNQCFEP 302
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 246 bits (602), Expect = 3e-66
Identities = 113/158 (71%), Positives = 129/158 (81%)
Frame = -1
Query: 603 HEQLSVAEITKRMXRARPTRW*NATPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 424
HE SV EIT + + PR G+YMA C+LYRGDV+P+DV AA+ TIK KRTI
Sbjct: 283 HESNSVQEITNQCFEPY-NQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTI 341
Query: 423 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 244
QFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+K
Sbjct: 342 QFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSK 401
Query: 243 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 130
RAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 402 RAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
Score = 42.3 bits (95), Expect = 8e-05
Identities = 25/60 (41%), Positives = 30/60 (50%)
Frame = -2
Query: 674 VPYPRIHFPLVTYAPVXSXREXLPMNSFPSPRSXNAXFEPAQPDGEMRPPVMASTWLAVC 495
VPYPRIHFPLVTYAP+ S + S N FEP + P A ++A C
Sbjct: 260 VPYPRIHFPLVTYAPIVSAAKAF-HESNSVQEITNQCFEPYNQMVKCDP--RAGRYMATC 316
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 104 bits (249), Expect = 2e-23
Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Frame = -1
Query: 600 EQLSVAEITKRMXRARPTRW*NATPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 421
+ +SV E+T++M A A PRHG+Y+ L+RG V K+V+ I +++TK +
Sbjct: 282 QAVSVPELTQQMFDAN-NMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAY 340
Query: 420 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 241
FV+W P + PP DL + + + N+T+I E + RL +F M+ ++
Sbjct: 341 FVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRK 392
Query: 240 AFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 133
AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 674 VPYPRIHFPLVTYAPV 627
VP+PR+HF +V +AP+
Sbjct: 258 VPFPRLHFFMVGFAPL 273
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 52.0 bits (119), Expect = 9e-08
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Frame = -1
Query: 495 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 316
+ +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + M
Sbjct: 323 IIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----M 377
Query: 315 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 148
L+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 378 LANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/66 (30%), Positives = 26/66 (39%)
Frame = -2
Query: 551 QPDGEMRPPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 372
QP P + S VV P + RP++P P LS V PV+ V +
Sbjct: 531 QPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVP 590
Query: 371 HPPWCP 354
PP P
Sbjct: 591 QPPVAP 596
Score = 25.4 bits (53), Expect = 9.4
Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Frame = -2
Query: 584 PRSXNAXFEPAQPDGEMRP-----PVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSN 420
P+ A P P RP P S VV P + RP++P P S
Sbjct: 605 PQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSV 664
Query: 419 SSTGVQPVSRSVSTTSHPPWCP 354
PV V + PP P
Sbjct: 665 PQPPAAPVVPEVPSVPQPPAVP 686
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 471 WVRRHHGTAYSKPCTCHDGGSHFTIWLGGL 560
W R H Y+KPC DGG W G+
Sbjct: 16 WRRDHPFGFYAKPCKSSDGGLDLMNWKVGI 45
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 284 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 111
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 110 EPKSTK 93
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 452 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 366
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 455 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 360
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = -2
Query: 563 FEPAQPDGEMRPPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSV 384
F A P + PP + + V P + RP+L S+ S S + PV++
Sbjct: 73 FSHAAPLHPLSPPSFTHSQPQIQAQPVPRRPSLFDRPNLVSRSSSRLGDSPSLSPVAQVA 132
Query: 383 STTSH 369
+ H
Sbjct: 133 NPIHH 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,855
Number of Sequences: 5004
Number of extensions: 58494
Number of successful extensions: 215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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