Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J09
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             27   2.3  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.3  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    27   3.0  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    27   4.0  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    27   4.0  
SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...    27   4.0  

>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = -1

Query: 640 WHNTLMLIPTHTQQTFSKSKRENNDKGDI---FYASCDEDNDCVTIELPCEEEIPVQTEI 470
           W N   + P    Q FSKSK  +  +G+    F  S +E+ +        EE+I   + +
Sbjct: 164 WKNKCFISPQKDNQGFSKSKHLSTYEGETENGFSTSTEEEEE-------EEEDIVSASWV 216

Query: 469 DSVKNDSSAITLECDMKMLSPMTLSPKSVEDNLL 368
           D++  D ++     +  +   + +  +S +D LL
Sbjct: 217 DNLDMDMASFNSHRERFLTEHVNMDERSDDDFLL 250


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 612 VGMSIRVLCQYPVYVMLDVYYST 680
           +G    +L +YPVYV+L  YY T
Sbjct: 72  LGYGWLLLTKYPVYVLLSTYYLT 94


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 508 LPCEEEIPVQTEIDSVKNDSSAITLECD---MKMLSPMTLSPKS 386
           +P   E+PV+T +DSV   ++A++   +   M   SP+   P+S
Sbjct: 147 IPNTPELPVKTTLDSVNEIAAALSTHAESSPMDATSPVDSMPES 190


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 333 KSELRLVCAGDKSKLSSTDFGDRVIGESIFMSHSNVIAE 449
           + E  L  + D  K ++ DFGD    E     H N++A+
Sbjct: 239 EDEEGLSLSEDGKKFANIDFGDYSSSEEFLKEHLNILAD 277


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 454 RSSPNQSLSELGFLLRREVLS*RNHYLRHSLRRICRLYRCSPSLISRRS 600
           RS       E  FL+    +S  NH+ +  L R C+ YR   ++I   S
Sbjct: 75  RSLTTLGKEETDFLVDAVFVSESNHHEKEILHRTCKRYRIPLNIIDNPS 123


>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 67  HIYYIEPLQYIDEVATIFKQLVCHFFHLNIT 159
           H+  IEP +YID++A     L C  FH   T
Sbjct: 70  HLMVIEPERYIDQLADAGASLFC--FHYEAT 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,382
Number of Sequences: 5004
Number of extensions: 55978
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)