Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J09
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745...    31   0.79 
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592...    29   5.5  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    29   5.5  
08_02_0766 - 20993207-20993307,20993510-20993612,20993686-209937...    28   7.3  
04_03_0298 + 14080353-14080927,14081041-14081554                       28   9.7  
04_03_0293 - 14001443-14001956,14002070-14002644                       28   9.7  

>03_05_0261 -
           22470565-22470714,22472101-22474270,22474368-22474540,
           22474763-22474924,22476420-22476560
          Length = 931

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 385 PTSETGSSARASSCRTPT*SLNYRSSPNQS 474
           P  + G    A SC +PT SL  + SPN+S
Sbjct: 12  PPEQVGDGVEARSCASPTPSLRRKGSPNRS 41


>07_03_0044 -
           12758606-12758676,12758765-12758860,12759197-12759299,
           12759379-12759474,12759537-12759603,12759682-12759749,
           12759898-12759973,12760112-12760197,12760285-12760361,
           12761461-12761533,12761627-12761875,12761997-12762089,
           12762218-12762292,12762661-12762716,12763473-12763513,
           12763907-12764001,12764085-12764158,12765052-12765145,
           12765484-12765519
          Length = 541

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 622 LIPTHTQQTFSKSKRENNDKGDIFYASCDEDNDCVTIELPCEEE 491
           L PT T+   ++  ++  DK       C+ + D  T+E+ C EE
Sbjct: 126 LSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEE 169


>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
            282768-282923,283224-283349,283426-283560,283815-283942,
            284037-284148,284233-284547,284655-284771,284871-285166,
            285252-285783,287980-288082,288808-288881,288965-289062,
            289340-289380,289977-290032,290170-290244,290377-290469,
            290602-290850,290930-291002,291681-291766,291853-291938,
            292067-292142,292280-292347,292430-292496,292570-292665,
            292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 622  LIPTHTQQTFSKSKRENNDKGDIFYASCDEDNDCVTIELPCEEE 491
            L PT T+   ++  ++  DK       C+ + D  T+E+ C EE
Sbjct: 1629 LSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEE 1672


>08_02_0766 -
           20993207-20993307,20993510-20993612,20993686-20993730,
           20993848-20993916,20994463-20994510,20995357-20995404,
           20995492-20995551,20996063-20996119,20996403-20996471,
           20996511-20996603
          Length = 230

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 307 AVTITTRSLSQSSGWCAPETRANYLPPTSETGSSARAS 420
           ++T+ T +LS S GW AP   AN+    +E+ S ++A+
Sbjct: 91  SLTVMT-ALSVSLGWVAPNLDANFKSNKAESKSKSKAN 127


>04_03_0298 + 14080353-14080927,14081041-14081554
          Length = 362

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 665 IKHDVDRILAQHSYAHPYTHAADLLE 588
           +K   +R+   HS  H Y HA DLL+
Sbjct: 39  VKSQNERVKYLHSVNHAYNHAVDLLD 64


>04_03_0293 - 14001443-14001956,14002070-14002644
          Length = 362

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 665 IKHDVDRILAQHSYAHPYTHAADLLE 588
           +K   +R+   HS  H Y HA DLL+
Sbjct: 39  VKSQNERVKYLHSVNHAYNHAVDLLD 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,683,178
Number of Sequences: 37544
Number of extensions: 359111
Number of successful extensions: 879
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)