Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J07
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit...    26   5.2  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    26   6.8  

>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
           Arc21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 275 FTRLTDIERTGNVAVIGILVKLR 343
           F  LTD+  TGN+A++ +  K R
Sbjct: 8   FLSLTDVPTTGNIAMLPLKTKFR 30


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 277 KKKIPINCRLSPKELPSMDRFFRRMCLSKL 188
           K+ +PI C+    E  +  RF+   C+SKL
Sbjct: 305 KQHLPIQCKRFRSERRANARFYLENCVSKL 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,945
Number of Sequences: 5004
Number of extensions: 50767
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)