Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_J06
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1536 - 27537394-27537576,27537837-27538073,27538164-275390... 33 0.26
08_02_0223 - 14452059-14452359,14452439-14452609,14452692-144532... 31 1.4
06_01_0149 + 1124427-1126805 30 1.8
10_08_0307 - 16654691-16654890,16656230-16656698 30 2.4
04_01_0179 + 2021977-2024890,2025117-2025610 30 2.4
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211... 29 4.2
10_02_0056 - 4656268-4656804 29 4.2
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706... 29 4.2
01_06_0509 - 29921224-29924589 29 5.5
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 28 7.3
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 28 9.6
03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570 28 9.6
>07_03_1536 -
27537394-27537576,27537837-27538073,27538164-27539078,
27540028-27540282,27540872-27540940,27542743-27542805,
27542833-27542901,27542962-27542997
Length = 608
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = -3
Query: 584 LMVYVTAVEALFTLCSVTGLLWMRYTR--PRLQRPIRVSLVLPAIFLITCTFIVICSCFK 411
L ++ VE L V W + R PR V ++L + F IT + CF
Sbjct: 222 LREWLPPVEGAVALSIVLAFAWQKAVRAWPRAM----VGVILWSSFGITLAVGAMLMCFS 277
Query: 410 YPKHVGIGVAFI--ALGVPIYMIFI 342
P VG+GVA + ++G +Y ++
Sbjct: 278 MPATVGLGVAMVMFSIGTGLYACWV 302
>08_02_0223 -
14452059-14452359,14452439-14452609,14452692-14453299,
14453393-14453524,14453606-14454067,14454146-14454979
Length = 835
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 642 THIYVPGHPAATAVERHRSSDGVRDCCRSVVHP 544
T GHPA TAV++H S G RS +P
Sbjct: 24 TEAVAEGHPATTAVQQHTSMSGGTSASRSSRNP 56
>06_01_0149 + 1124427-1126805
Length = 792
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 543 LLGDWLAVDALHATTPPATDPRQSRPARYLPDNLHIY 433
L+ DW AV LHA AT P +R L NL Y
Sbjct: 454 LISDWFAVSLLHAYYGKATPPAAARFVLKLSRNLRHY 490
>10_08_0307 - 16654691-16654890,16656230-16656698
Length = 222
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +3
Query: 381 GDPDAD-VLRVFKA-----RAYDNKCAGYQEDSGQDETDADRSLEAWSRVAH 518
G PDAD ++R + A A + G EDS D +D D S W+R AH
Sbjct: 35 GHPDADRLVRAWLAVSRRRHALVRRLVGLLEDSYGDGSDGDGSSWPWNRAAH 86
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 686 DFTHRHXRGXPPVPSLIFMCLVTLLLLLSNDIEALM 579
D +H H G P P + + +T LLLLSND+ ++
Sbjct: 407 DLSHNHLTGAIP-PGIFLLRNLTKLLLLSNDLSGVI 441
>11_05_0058 +
18719852-18719929,18720032-18720889,18720969-18721118,
18722248-18722496,18722531-18722575,18722576-18722638
Length = 480
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 331 FCHLMNIMYMGTPSAMKATPMPTCFGYLK 417
F H NI Y PS+ ATPMPT +LK
Sbjct: 141 FIHYRNIQY-NFPSSNFATPMPTSVEHLK 168
>10_02_0056 - 4656268-4656804
Length = 178
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 465 QDETDADRSLEAWSRVAHPQQASHRAEGEQRFDSSHVHH 581
+D +A + SR+A +R GE FDSS +HH
Sbjct: 74 KDSENASFASRRRSRIASAIIVDYRCLGEPLFDSSRIHH 112
>01_05_0264 +
20168409-20168593,20168726-20169055,20170142-20170670,
20170825-20170958,20171080-20171252,20171274-20171840,
20172487-20172716,20172954-20172995,20173096-20173224
Length = 772
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 694 PLAISLIDIXEVDPR-CLHSYLCAWSPC 614
P +I IDI EVD R H + CA SPC
Sbjct: 403 PGSIVEIDIKEVDGRPYFHRFFCALSPC 430
>01_06_0509 - 29921224-29924589
Length = 1121
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 235 DHNSLQSSGKHKNSLEHAKLKLLHAVNIQLGLFCHLMNIMYMGT 366
DH+S +SS H++ A + A+ + LFC ++ I+ +G+
Sbjct: 697 DHSSPRSSNDHQSHRRQASMASSIAMGLLFSLFCIIVIIIAIGS 740
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 447 YQEDSGQDETDADRSLEAWSRVAHPQQASHRAE-GEQRFDSSHVHHQSFD 593
Y+ED G +D + E+ +R P HR E G R S H + D
Sbjct: 510 YREDDGHGRSDRHKRDESDNRKRSPDTGKHRREDGGHRETSKHRERRQRD 559
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 235 DHNSLQSSGKHKNSLEH-AKLK 297
DHN + SG+ KN L+H AKLK
Sbjct: 243 DHNYVLDSGEEKNGLKHAAKLK 264
>03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570
Length = 179
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 342 DEYHVYGDAQRYEGDPDADVLRVFKARAYDNKCAGYQEDSGQDETDADRSLE 497
D V DA+ + GD R D+ AG +ED D+ D DRSL+
Sbjct: 47 DAVVVVPDARPWVGDLSGAAASYRDGREEDDDDAG-EEDDENDDDDEDRSLD 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,180,854
Number of Sequences: 37544
Number of extensions: 434551
Number of successful extensions: 1261
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -