Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J05
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    48   2e-06
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.7  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    27   2.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   4.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   5.3  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 42/163 (25%), Positives = 62/163 (38%), Gaps = 9/163 (5%)
 Frame = -1

Query: 621 YSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGS 442
           Y DP N E L  I  G  P  L G  ++  + +   +H     +V   + F+GKG  LGS
Sbjct: 233 YDDPANQEMLRYINSGRAPLHLLGVSMNQPIDVV-VQHRMDEDYVAPFKPFSGKGQRLGS 291

Query: 441 XXXXXXXXXXXXXXXQADRAA---------NLRAAQSAVTLDETQPVTTLQFRLADGTHI 289
                               +         N     +++ +DE +P T +Q RL++G   
Sbjct: 292 TYMQPRMSQMPGGLYTDTSTSSSVPINVKPNSTTPHASLQIDENKPTTRIQVRLSNGGRT 351

Query: 288 TGRFNHSHTVGALREFVSRAEPAYQLRPFSXLTAFPSAELGDD 160
               N SHT+  + E V    P      F     FP+  L DD
Sbjct: 352 VLTVNLSHTLHDIYEAVRAVSPG----NFILSVPFPAKTLEDD 390


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 665  DTVSPVSLALVVVDSMQTLARDHLQFVLIYSQL 763
            DTV  V + +++   +QTL R+H+  VLI  Q+
Sbjct: 2299 DTVQTVGIGIIL---LQTLTREHITVVLITGQI 2328


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 618 SDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHM 451
           S PENA +L  +   EI S +     S++ S  D R  + P H +   A  G G M
Sbjct: 138 SCPENAIYLVVLPSYEIESSIDYYLSSLQESFSDFRVPKDPLHGLSGYAVFGLGDM 193


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 710  MQTLARDHLQFVLIYSQL 763
            +QTLARDH+ F L+ +Q+
Sbjct: 2270 LQTLARDHVAFTLMLAQV 2287


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 129 EQVRLRQGSRRRHPAPRSGRP 191
           + +RL    R R P+PRSGRP
Sbjct: 337 QSLRLGSLHRSRSPSPRSGRP 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,010
Number of Sequences: 5004
Number of extensions: 27101
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)