Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J04
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    30   0.33 
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   7.2  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    25   9.5  

>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 764 SVSAGHERGFTFTGTSAAVRVLITTLHQNLRKIEPDVHLDYKVISSHLAA 615
           + SA HE  F    TS A  + I+         EP+V  D K +SS  AA
Sbjct: 73  NASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 546 LRDMCSRHSGLE-PPDAVDDRSARAPLHHEQPSASGLTHQRGIPPRVV 406
           ++D  S  S L   P++++  +    + H   SA  L H+  +PP +V
Sbjct: 172 MKDGISPQSNLHLSPNSIEKPNMHQNVLHNDRSADNLNHRYQVPPTLV 219


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 356 GPAAPRSPAGTTRPPSE 406
           G A+P +PA  TRPP E
Sbjct: 296 GAASPPAPAQDTRPPEE 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,490
Number of Sequences: 5004
Number of extensions: 40163
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)