Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_J04
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 31 1.1
01_06_1179 - 35161229-35162368 31 1.1
09_03_0166 + 12956794-12956832,12956936-12956977,12957084-129571... 30 1.9
04_04_0110 + 22840636-22840720,22840958-22841310 30 1.9
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627... 29 4.3
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996... 29 5.7
09_04_0508 + 18203079-18203900 28 7.5
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 28 7.5
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 7.5
03_01_0646 + 4742398-4742994,4743681-4744085 28 7.5
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719... 28 9.9
10_08_0586 + 19005991-19006273,19006481-19006642,19006741-190067... 28 9.9
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 28 9.9
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686... 28 9.9
04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329 28 9.9
02_04_0098 + 19701999-19702185,19703698-19704551,19704732-197048... 28 9.9
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 176 GVVVSPLAPAYNDSPEPMDTDDKEEESQDS 87
G+ VSP +P Y+DSPEP D + D+
Sbjct: 45 GLPVSPPSPGYSDSPEPPLPDSPPSQEPDT 74
>01_06_1179 - 35161229-35162368
Length = 379
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 344 PPRTGPAAPRSPAGTTRPP 400
PP PAA RSPA TT+PP
Sbjct: 289 PPPPPPAAARSPAPTTKPP 307
>09_03_0166 +
12956794-12956832,12956936-12956977,12957084-12957149,
12957237-12957350,12957435-12957515,12957613-12957690,
12958702-12958784,12959645-12959726,12959801-12959901,
12960016-12960055,12960162-12960221,12960302-12960348,
12960437-12960575,12960716-12960931,12961010-12961344,
12961525-12961596,12962449-12962589,12962680-12962716,
12962837-12963256
Length = 730
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 219 RGRQGHILGDHGVGRRGGLPASAR 148
RG+ GH+ G HGV + G+ +S+R
Sbjct: 530 RGKTGHVHGHHGVTKSSGVTSSSR 553
>04_04_0110 + 22840636-22840720,22840958-22841310
Length = 145
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 453 SASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPV-RGGALP 334
SA L + V+DG R +PAG++G+AG + GG P
Sbjct: 5 SAMALAFAVVVMSSCVADGVRTIPAGVQGSAGGLHNGGTAP 45
>03_05_0737 +
27258320-27259007,27259263-27259435,27262684-27262758,
27262832-27263296
Length = 466
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 218 EGGKDISLEITVWDGVVVSPLAPAYNDSPEPMDTDDKE 105
E G + L V + +VVSP APA +S D+KE
Sbjct: 254 EMGAAVDLSAAVQESMVVSPEAPAVEESQAEGHKDEKE 291
>12_01_1019 -
10398880-10399314,10399401-10399481,10399560-10399652,
10399784-10399999,10403837-10403935,10404244-10404867,
10404946-10405033,10405167-10405430,10406437-10406504
Length = 655
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 546 LRDMCSRHSGLEPPDAVDDRSARAPLHHEQPSASGLTHQ 430
LR + S+ +G+ PP A+DD A P H S G Q
Sbjct: 605 LRSVVSKLAGIPPP-AMDDNDASGPSHTTTTSIDGSAMQ 642
>09_04_0508 + 18203079-18203900
Length = 273
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 356 GPAAPRSPAGTTRPPSETTRGGMPR*WVRPDAEGCS*CSGARADLSSTASGGSSPEC-RE 532
GPAA ++PA PP+ TT M + + A+ + A + S A GG + C +
Sbjct: 31 GPAAAKAPAAPPAPPNVTT--AMAKGGCKAFADLIAASPDASSTYQSAAGGGITVFCPTD 88
Query: 533 HMSRXKTDQYF*LMNDGRS 589
R +Y L DG++
Sbjct: 89 DAVRAFLPRYKNLTADGKA 107
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 474 PLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGP 355
P HH+ P G H IPP+ V + GL GA P
Sbjct: 683 PFHHQAPLQFG-GHNPQIPPQGVVPSSLQMSMGLHGANAP 721
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Frame = +2
Query: 344 PPRTGPAAPRSPA---GTTRPPSETTRGG 421
PP PAAPR P G PP RGG
Sbjct: 353 PPPAAPAAPRPPGPGPGPPPPPGAAGRGG 381
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 480 RAPLHHEQPSASGLTHQRGIPPRVVSDGGR--VVP--AGLRGAAGPVRGGAL 337
RA + PSA+G R +PP + G VP AG+R A G AL
Sbjct: 213 RAEVERATPSAAGACASRSLPPAAILSGAPSCSVPFSAGVRFPAAGASGAAL 264
>12_01_0788 +
7192937-7192994,7193074-7193160,7193242-7193307,
7193447-7193555,7194522-7194785,7194919-7195006,
7195085-7195708,7196017-7196140,7196195-7196337,
7196434-7196649,7196781-7196873,7196952-7197032,
7197120-7197504,7197599-7197636
Length = 791
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 546 LRDMCSRHSGLEPPDAVDDRSARAPLHHEQPSASG 442
LR + S+ +G+ PP A+DD A P H S G
Sbjct: 745 LRSVVSKLAGIPPP-AMDDNDALGPSHTTTTSIDG 778
>10_08_0586 +
19005991-19006273,19006481-19006642,19006741-19006796,
19006899-19007061,19007753-19007859,19008879-19008945,
19009176-19009375
Length = 345
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 279 DVASRGGARGSPVRPGSPALRGRQGHILGD 190
D GG RGS + G RGR GH GD
Sbjct: 63 DRGGGGGGRGSGISRGVAIRRGRGGHRDGD 92
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 27.9 bits (59), Expect = 9.9
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 344 PPRTGPAAPRSPAGTTRPPSETTRGGMPR*W-VRPDAEGC-S*CSGARADLSSTASGGSS 517
PP GPA P P G + T R +PR +RP A + SGA D ++ AS G +
Sbjct: 452 PP--GPARPGKPLGRRPDFARTRRWRLPRQLAMRPRARDTQATTSGAAGDEAAGASLGPT 509
Query: 518 P 520
P
Sbjct: 510 P 510
>08_02_0592 +
19064025-19066596,19067036-19067084,19068530-19068605,
19068767-19068922
Length = 950
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 528 RHSG-LEPPDAVDDRSARAPLHHEQPSASGLTHQRGIPPRVVSDGGRVVPAGLRGAAGPV 352
RH G L +++R+AR+P P ++ R PP D V G RG G V
Sbjct: 109 RHGGELGTKRGLEERAARSPPPPPPPKRRAVSAIRQFPPGCGRDAAAPVARG-RGCDGGV 167
Query: 351 R 349
R
Sbjct: 168 R 168
>04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329
Length = 327
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 173 VVVSPLAPAYNDSPEPMDTDDKEEESQ 93
VV +APA D P + +DD+EEES+
Sbjct: 208 VVEKEVAPALTDPPVIIISDDEEEESK 234
>02_04_0098 +
19701999-19702185,19703698-19704551,19704732-19704890,
19705290-19705537,19705837-19705927,19706066-19706251
Length = 574
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 269 RVVARGGHLYVLGLQPFEGGKDISLEITVWDGVVVSPLAPAYNDSPE 129
+VV G H V GL ++ ++SLE++ + L PA+ D E
Sbjct: 383 KVVKPGEHFQVTGLGTYQADVEVSLEVSGLE--KAEALDPAFGDDAE 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,870,950
Number of Sequences: 37544
Number of extensions: 376107
Number of successful extensions: 1858
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1853
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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