Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_J02
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 161 8e-41
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 130 3e-31
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 119 4e-28
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 110 3e-25
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 98 1e-21
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 91 1e-19
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 82 8e-17
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 79 5e-16
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 79 5e-16
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 79 5e-16
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 76 5e-15
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 76 5e-15
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 75 1e-14
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 73 5e-14
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 73 6e-14
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 69 6e-13
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 60 5e-10
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 56 4e-09
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 49 7e-07
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 46 6e-06
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 40 4e-04
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 5.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 5.4
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 7.1
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 25 9.4
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 25 9.4
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 161 bits (392), Expect = 8e-41
Identities = 102/258 (39%), Positives = 138/258 (53%), Gaps = 13/258 (5%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
+YGPPG GK K A K PE LNMY+G+SE NVR V E AR SSPC+IF
Sbjct: 693 LYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIF 752
Query: 606 VDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLE 427
DELD++AP RVVSQLLAELD ++ +D + +VF++GATNRPDLL+
Sbjct: 753 FDELDSIAPHRGNSSDSGNVMDRVVSQLLAELDSIS----KDNNKYVFVIGATNRPDLLD 808
Query: 426 QSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGADLL 247
SLLRPGR DKLVY+G K S+L AL + +KL ++L +A+ TGAD+
Sbjct: 809 PSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMY 868
Query: 246 QXXXXXXXXXXXXXXAKLH-----NGT-LKESEL-----SPDSIVIGVT--ELWEGVVSF 106
++ +GT L E + DS+ + +T + +
Sbjct: 869 ALCSDAVLSAIKRKTNEIDLLIQASGTDLSTEEFFKRNENQDSLELRITKEDFLTSLKKL 928
Query: 105 RPSVTDDELSHYEAMESQ 52
RPS+++ EL YE + Q
Sbjct: 929 RPSISEQELHRYEMVRHQ 946
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 130 bits (313), Expect = 3e-31
Identities = 91/254 (35%), Positives = 133/254 (52%), Gaps = 9/254 (3%)
Frame = -1
Query: 783 YGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIFV 604
+GPPG GK K A K PE L+M+ G+SE NVR + + ARA++PC++F+
Sbjct: 537 FGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFL 596
Query: 603 DELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLEQ 424
DELD++A RVV+QLL E+DGVN+ + VF++GATNRPD ++
Sbjct: 597 DELDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNSKKN------VFVIGATNRPDQIDP 650
Query: 423 SLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGADL-- 250
+L+RPGRLD+L+YV P + S+L+ R + +V+L AVA+A +GADL
Sbjct: 651 ALMRPGRLDQLIYV-PLPDEEARFSILQTQLRHTPVAEDVDLRAVAKA-THGFSGADLEF 708
Query: 249 -LQXXXXXXXXXXXXXXAKLHNGT----LKESELSPDSIVIGVT--ELWEGVVSFRPSVT 91
+Q K N T + + D+ V V + E + R SV+
Sbjct: 709 VVQRAVKLAIKDSIEEDIKRENETGEAPADDVVMDEDASVSQVQRHHVEEAMKMARRSVS 768
Query: 90 DDELSHYEAMESQM 49
D E+ YEA Q+
Sbjct: 769 DAEVRRYEAYAHQL 782
Score = 87.4 bits (207), Expect = 2e-18
Identities = 65/179 (36%), Positives = 91/179 (50%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
+YGPPG GK + A PE ++ G+SE N+RK E A +SP IIF
Sbjct: 263 MYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIF 322
Query: 606 VDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLE 427
+DE+D++AP RVVSQLL +DG+ S V +M ATNRP+ ++
Sbjct: 323 IDEIDSIAP--KREKTNGEVERRVVSQLLTLMDGMK------ARSNVVVMAATNRPNSID 374
Query: 426 QSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGADL 250
+L R GR D+ V VG T + +L + KL +V+LE +A A G+DL
Sbjct: 375 PALRRFGRFDREVDVGIPDPT-GRLEILRIHTKNMKLADDVDLEQIA-AETHGYVGSDL 431
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 779
Score = 119 bits (287), Expect = 4e-28
Identities = 75/182 (41%), Positives = 105/182 (57%), Gaps = 3/182 (1%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
++GPPGCGK K A + PE LN Y+G+SE VR+V ARASSPC+IF
Sbjct: 531 LWGPPGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLRARASSPCVIF 590
Query: 606 VDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLE 427
DELDA+ P RVV+ LL ELDG++ D S V+++ ATNRPD+++
Sbjct: 591 FDELDAMVP--RRDDSLSEASSRVVNTLLTELDGLS-----DRSG-VYVIAATNRPDIID 642
Query: 426 QSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKC---TGA 256
++LRPGRLDK + V E+ +L+ L ++ L EVNL+ + ++C +GA
Sbjct: 643 PAMLRPGRLDKTLLV-DLPDAHERVEILKTLTKQTPLHEEVNLDVLGR--DERCSNFSGA 699
Query: 255 DL 250
DL
Sbjct: 700 DL 701
Score = 85.8 bits (203), Expect = 6e-18
Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 1/180 (0%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
++GPPGCGK A P ++ G+SE+ VR+V E A++ +PC++F
Sbjct: 213 LHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMF 272
Query: 606 VDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLE 427
+DE+DA+ P R+V+Q L +D S ++ V ++GATNRPD L+
Sbjct: 273 IDEIDAVTP--KRESAQREMERRIVAQFLTCMD--ELSFEKTDGKPVLVIGATNRPDSLD 328
Query: 426 QSLLRPGRLDK-LVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGADL 250
+L R GR D+ + P REK +L + + KL + + +A+ P GADL
Sbjct: 329 SALRRAGRFDREICLTVPSQDAREK--ILRTMAKGLKLSGDFDFRQLAKQTPG-YVGADL 385
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 110 bits (264), Expect = 3e-25
Identities = 65/180 (36%), Positives = 100/180 (55%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
+YGPPGC K K A K PE + ++G+SE VR+V + AR +SP +IF
Sbjct: 587 LYGPPGCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIF 646
Query: 606 VDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLE 427
DE+DAL VV+ LL ELDG+ + V ++ ATNRPD+++
Sbjct: 647 FDEIDALTANRGEDNSSDR----VVAALLNELDGIEALRN------VLVLAATNRPDMID 696
Query: 426 QSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGADLL 247
+L+RPGRLD+L+YVGP + +++ K K +V+L+ +AE + C+GA+++
Sbjct: 697 PALMRPGRLDRLLYVGP-PNFEARKQIVKIQAEKMKFAEDVDLDLIAEK-TEGCSGAEVV 754
Score = 85.4 bits (202), Expect = 8e-18
Identities = 51/136 (37%), Positives = 74/136 (54%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
+YGPPG GK + A P + Y+G++E +RK+ E ARA P IIF
Sbjct: 318 LYGPPGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIF 377
Query: 606 VDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLE 427
+DE+DALAP R V+ LL LDG+ +G V ++ ATNRP+ ++
Sbjct: 378 IDEIDALAP--KRTEDVSEAESRAVATLLTLLDGMANAGK------VVVIAATNRPNSID 429
Query: 426 QSLLRPGRLDKLVYVG 379
++L RPGRL+K + +G
Sbjct: 430 EALRRPGRLEKEIEIG 445
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 97.9 bits (233), Expect = 1e-21
Identities = 61/179 (34%), Positives = 97/179 (54%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
++G PGCGK + + K PE L+ YIG+SE+ VR + A+ + PC++F
Sbjct: 645 LFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLF 704
Query: 606 VDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLE 427
DE D++AP RVV+Q+L ++DG ++ V+I+ AT RPD+++
Sbjct: 705 FDEFDSVAP--RRGQDSTGVTDRVVNQILTQMDGA------ESLDGVYIVAATTRPDMID 756
Query: 426 QSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGADL 250
+LLRPGRLDKL++ E+ VL+ L ++ + L+ ++ L D T ADL
Sbjct: 757 PALLRPGRLDKLIFC-DLPNEEERLEVLQKLANRFHIENAAMLKKLS-TLTDGYTYADL 813
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 91.5 bits (217), Expect = 1e-19
Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 1/180 (0%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
+YGPPG GK K A S E + Y+G+ VR V AR ++P IIF
Sbjct: 173 LYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIF 232
Query: 606 VDELDALAPXXXXXXXXXXXXXR-VVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLL 430
+DE+DA+A + ++ +LL ++DG D + V ++ ATNR D L
Sbjct: 233 IDEIDAIATKRFDAQTGADREVQRILIELLTQMDGF------DQGANVKVIMATNRADTL 286
Query: 429 EQSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGADL 250
+ +LLRPGRLD+ + Y R++ V + + K L PEV+L+ PD +GA +
Sbjct: 287 DPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFI-MRPDASSGAQI 345
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 82.2 bits (194), Expect = 8e-17
Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 4/182 (2%)
Frame = -1
Query: 780 GPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIFVD 601
GPPG GK K A E L M++G VR + AR ++PCIIF+D
Sbjct: 336 GPPGTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFID 395
Query: 600 ELDAL--APXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLE 427
E+DA+ A ++QLL E+DG +S + + TNRPD+L+
Sbjct: 396 EIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFT------SSEHIVVFAGTNRPDVLD 449
Query: 426 QSLLRPGRLDKLVYVG-PYCGTREKTSVLEALCRKYKLRPEVNLEAVAEA-LPDKCTGAD 253
+LLRPGR D+ + + P G RE+ + + + K ++L A A L TGAD
Sbjct: 450 PALLRPGRFDRQITIDRPDIGGREQ--IFKVHLKHIKAADNIDLIAKRLAVLTSGFTGAD 507
Query: 252 LL 247
++
Sbjct: 508 IM 509
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 79.4 bits (187), Expect = 5e-16
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 1/180 (0%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
+YGPPG GK + A S ++ YIG+S +R++ A+ PC+IF
Sbjct: 171 LYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIF 230
Query: 606 VDELDAL-APXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLL 430
+DE+DA+ R + +LL ++DG + G I+ ATNRPD L
Sbjct: 231 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTK------IIMATNRPDTL 284
Query: 429 EQSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGADL 250
+ +LLRPGRLD+ + + P + +L+ K + E++ EA+ + L D GADL
Sbjct: 285 DPALLRPGRLDRKIEI-PLPNEVGRMEILKIHLEKVSKQGEIDYEALVK-LTDGTNGADL 342
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 79.4 bits (187), Expect = 5e-16
Identities = 55/141 (39%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKV---PEXLNMYIGQSEENVRKVXEXARA---- 628
+YGPPG GK +Q + M K+ PE LN Y+GQSEENVRK+ A
Sbjct: 309 LYGPPGTGKTLIARQIGK--MLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYRD 366
Query: 627 ----SSPCIIFVDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFI 460
S II DELDA+ +VV+QLLA++DGV D + + +
Sbjct: 367 RGEESGLHIIIFDELDAICKKRGSSGGDTGVGDQVVNQLLAKMDGV------DQLNNILV 420
Query: 459 MGATNRPDLLEQSLLRPGRLD 397
+G TNR D+++++LLRPGRL+
Sbjct: 421 IGMTNRKDMIDEALLRPGRLE 441
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 79.4 bits (187), Expect = 5e-16
Identities = 58/177 (32%), Positives = 86/177 (48%)
Frame = -1
Query: 780 GPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIFVD 601
GPPG GK + A + MY+G + VR++ AR +P IIF+D
Sbjct: 307 GPPGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFID 366
Query: 600 ELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLEQS 421
ELDA+ + ++QLL +LDG S +ED + V +GATN P+ L+ +
Sbjct: 367 ELDAIG--QKRNARDAAHMRQTLNQLLVDLDGF--SKNEDLAHPVVFIGATNFPESLDPA 422
Query: 420 LLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGADL 250
L RPGR D+ ++V P R + ++L R L +V+L +A GADL
Sbjct: 423 LTRPGRFDRHIHV-PLPDVRGRLAILLQHTRHVPLGKDVDLSIIARG-TSGFAGADL 477
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 76.2 bits (179), Expect = 5e-15
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 1/180 (0%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
+YGPPG GK + A E + Y+G+ VR++ E AR CIIF
Sbjct: 218 LYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIF 277
Query: 606 VDELDAL-APXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLL 430
DE+DA+ R + +L+ +LDG + G+ + ++ ATNRP+ L
Sbjct: 278 FDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN------IKVLFATNRPNTL 331
Query: 429 EQSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGADL 250
+++L+RPGR+D+ V G + +L + + ++ E +A P + TGA+L
Sbjct: 332 DEALMRPGRIDRKVEFG-LPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQ-TGAEL 389
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 76.2 bits (179), Expect = 5e-15
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 3/222 (1%)
Frame = -1
Query: 705 KVPEXLNMYIGQSEENVRKVXEXARASSPCIIFVDELDALAPXXXXXXXXXXXXXRVVSQ 526
K + L+ ++G++E +R + E A+++ P IIF DE+D LAP +VS
Sbjct: 337 KGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAP--VRSSKQEQIHASIVST 394
Query: 525 LLAELDGVNTSGDEDTSSFVFIMGATNRPDLLEQSLLRPGRLDKLVYVGPYCGTREKTSV 346
LLA +DG+ + G V I+GATNRPD ++ +L RPGR D+ Y P + +
Sbjct: 395 LLALMDGMESRGQ------VIIIGATNRPDAVDPALRRPGRFDREFYF-PLPDRDARKKI 447
Query: 345 LEALCRKYKLRPEVNLEAVAEALPDKCT---GADLLQXXXXXXXXXXXXXXAKLHNGTLK 175
+E R + P V E + L +K GADL +L+ T K
Sbjct: 448 IEIHTRNWD--PPVP-EWLCSMLAEKSKGYGGADLRALCTEAALNSIKRTYPQLYRST-K 503
Query: 174 ESELSPDSIVIGVTELWEGVVSFRPSVTDDELSHYEAMESQM 49
++ P +I + V + + PS +S + + ++
Sbjct: 504 RLQIDPKTIKVKVKDFVMSMKRMIPSSERSSISPSKPLSPEL 545
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 74.9 bits (176), Expect = 1e-14
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Frame = -1
Query: 705 KVPEXLNMYIGQSEENVRKVXEXARASSPCIIFVDELDALAPXXXXXXXXXXXXXRVVSQ 526
K + L+ ++G++E +R + E AR P IIF DE+D LAP +VS
Sbjct: 443 KGSDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEIDGLAP--IRSSKQEQTHSSIVST 500
Query: 525 LLAELDGVNTSGDEDTSSFVFIMGATNRPDLLEQSLLRPGRLDKLVYVGPYCGTREKTSV 346
LLA +DG++T G V ++GATNRP+ L+ +L RPGR D+ Y P + + +
Sbjct: 501 LLALMDGLDTRGQ------VVVIGATNRPNDLDPALRRPGRFDREFYF-PLPNKQARMKI 553
Query: 345 LEALCRKYKLR-PEVNLEAVAEALPDKCTGADL 250
LE + + PE L +AE+ GADL
Sbjct: 554 LEINSLHFSPKIPESYLLHLAES-TSGYGGADL 585
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 72.9 bits (171), Expect = 5e-14
Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
++GPPG GK + A P+ + M+IG + VR A+ SP IIF
Sbjct: 224 MFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIF 283
Query: 606 VDELDAL-APXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLL 430
+DELDA+ R + +LL +LDG +S D V ++ ATNR D L
Sbjct: 284 IDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-SSDDR-----VKVIAATNRVDTL 337
Query: 429 EQSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGADL 250
+ +LLR GRLD+ + P + +L RK + ++N E +A + D+ GA L
Sbjct: 338 DPALLRSGRLDRKLEF-PLPNEEARVGILRIHSRKMAIDDDINWEELARS-TDEYNGAML 395
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 72.5 bits (170), Expect = 6e-14
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 2/181 (1%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
+YGPPG GK + A E + YIG+ VR++ AR +P IIF
Sbjct: 184 LYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIF 243
Query: 606 VDELDAL--APXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDL 433
+DE+D++ + R + +LL +LDG E T + IM ATNR D+
Sbjct: 244 MDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGF-----EATKNIKVIM-ATNRIDI 297
Query: 432 LEQSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGAD 253
L+ +LLRPGR+D+ + P + +L R L ++L+++AE + + +GA+
Sbjct: 298 LDPALLRPGRIDRKIEFPP-PSAEARAEILRIHSRSMNLTRGIDLKSIAEKM-NGASGAE 355
Query: 252 L 250
L
Sbjct: 356 L 356
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 69.3 bits (162), Expect = 6e-13
Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 2/181 (1%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
+YG PG GK K A E + Y+G VR++ A SP I+F
Sbjct: 230 LYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVF 289
Query: 606 VDELDAL-APXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLL 430
+DE+DA+ R + +LL +LDG +TS + + ++ ATNR L
Sbjct: 290 IDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRD-----IKVIMATNRISDL 344
Query: 429 EQSLLRPGRLD-KLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTGAD 253
+ +L+RPGR+D K+++ P T+ K + K L +VNLE + + D +GA+
Sbjct: 345 DPALIRPGRIDRKILFENPDEATKRKIFTIHT--SKMNLGEDVNLEELIQC-KDDLSGAE 401
Query: 252 L 250
+
Sbjct: 402 I 402
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 59.7 bits (138), Expect = 5e-10
Identities = 43/135 (31%), Positives = 69/135 (51%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
+YGPPG GK K A + ++ ++G+SE VR++ E AR P IIF
Sbjct: 167 LYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIF 226
Query: 606 VDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLE 427
+DE+D+L R+ ++ L +++GV DE S V ++GATN P L+
Sbjct: 227 IDEIDSLC--GSRSEGESESSRRIKTEFLVQMNGVGK--DE---SGVLVLGATNIPWTLD 279
Query: 426 QSLLRPGRLDKLVYV 382
++ R R +K +Y+
Sbjct: 280 SAIRR--RFEKRIYI 292
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 56.4 bits (130), Expect = 4e-09
Identities = 46/169 (27%), Positives = 76/169 (44%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
+YGPPGCGK K A+ V + + G+S + V + AR P IIF
Sbjct: 130 LYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIF 189
Query: 606 VDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLE 427
+DE+D ++ ++ ++ DG+ SG S V ++GATNRP ++
Sbjct: 190 IDEIDTF--LRQRQRTDHEAMAQIKAEFMSMWDGL-LSG----QSRVLVLGATNRPADID 242
Query: 426 QSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEA 280
+++ R R+ K V+ P ++ +LE +K L + V A
Sbjct: 243 EAIRR--RMPK-VFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNA 288
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 49.2 bits (112), Expect = 7e-07
Identities = 62/257 (24%), Positives = 105/257 (40%), Gaps = 4/257 (1%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
++GPPG GK + A + Y+G SE+ VR + E A+ + +IF
Sbjct: 417 LFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIF 476
Query: 606 VDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGV-NTSGDEDT--SSFVFIMGATNRPD 436
VDE+D++ R+ ++ L + + N + D+ T S V ++ ATN P
Sbjct: 477 VDEIDSILSARNDSGNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPW 536
Query: 435 LLEQSLLRPGRLDKLVYVG-PYCGTREKTSVLEALCRKYKLRPEVNLEAVAEALPDKCTG 259
++++ R R K Y+ P TR K + L + E +LE + L + +G
Sbjct: 537 CIDEAARR--RFVKRTYIPLPEKETRYK-HLSHLLHNQVHCLTEEDLEELVN-LTEGYSG 592
Query: 258 ADLLQXXXXXXXXXXXXXXAKLHNGTLKESELSPDSIVIGVTELWEGVVSFRPSVTDDEL 79
+D+ L +E+ P I + + + RPSV+ + +
Sbjct: 593 SDITALAKDAAMGPLRNLGDAL---LTTSAEMIPP---ISLNHFKASLRTIRPSVSQEGI 646
Query: 78 SHYEAMESQM*NKQFSS 28
YE NKQF S
Sbjct: 647 HRYEEW-----NKQFGS 658
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 46.0 bits (104), Expect = 6e-06
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 4/183 (2%)
Frame = -1
Query: 786 VYGPPGCGKR**XKQ*ARSXM*XXSXSKVPEXLNMYIGQSEENVRKVXEXARASSPCIIF 607
++GPPG GK + A + ++G+SE+ VR + A+ SP IIF
Sbjct: 497 LFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIF 556
Query: 606 VDELDALAPXXXXXXXXXXXXXRVVSQLLAELDGV-NTSGDEDTSSF--VFIMGATNRPD 436
VDE+D+L R+ ++ L + + + T+ V ++ ATN P
Sbjct: 557 VDEIDSLLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPW 616
Query: 435 LLEQSLLRPGRLDKLVYVGPYCGTREKTSVLEAL-CRKYKLRPEVNLEAVAEALPDKCTG 259
++ + R R + Y+ T + + L +K+ L E ++EA+ +A + +G
Sbjct: 617 CIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLE-DIEAIVKA-TEYYSG 672
Query: 258 ADL 250
+DL
Sbjct: 673 SDL 675
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 39.9 bits (89), Expect = 4e-04
Identities = 31/76 (40%), Positives = 39/76 (51%)
Frame = -1
Query: 531 SQLLAELDGVNTSGDEDTSSFVFIMGATNRPDLLEQSLLRPGRLDKLVYVGPYCGTREKT 352
S LL LDGV TS DE +F+ TN P+ L+ +L+RPGR+D V Y G
Sbjct: 325 SGLLNALDGV-TSSDE---RIIFM--TTNHPEKLDPALVRPGRVD----VKAYLGNATPE 374
Query: 351 SVLEALCRKYKLRPEV 304
V E R Y PE+
Sbjct: 375 QVREMFTRFYGHSPEM 390
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 675 GQSEENVRKVX-EXARASSPCIIFVDELDAL 586
G+ EE ++ V E + +P I+FVDE+ L
Sbjct: 256 GEFEERIKSVLKEVEESETPIILFVDEMHLL 286
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 399 DKLVYVGPYCGTREKTSVLEAL 334
DK VYVG + RE+ S +EAL
Sbjct: 235 DKKVYVGHHVSRRERQSKVEAL 256
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 7.1
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Frame = +2
Query: 122 SHSSVTPITMESGLSSL-----SFNVPLCXXXXXXXXXXDRAVETTCSKSAPVHLSGSAS 286
S+SSV P + S +SS S+ L T + S+P + + S
Sbjct: 458 SNSSVIPTSAPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATATSSSPYYSNSSII 517
Query: 287 ATASKFTSGLSLYFRQSASSTDVFS 361
+ TSG F S S T FS
Sbjct: 518 VPTTVSTSGSVSSFSSSPSPTSSFS 542
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = -1
Query: 468 VFIMGATNR----PDLLEQSL--LRPGRLDKLVYVGP 376
+F++GAT P + Q L L PGRL +L ++GP
Sbjct: 195 IFVLGATKECSLPPSIWLQGLNFLFPGRLFQLHFIGP 231
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 438 DLLEQSLLRPGRLDKLVYVGPYCGTREKTSVLEALCRKYKLRPEVNLEAVAEAL 277
D L + + +D+L+ + P C E T L LC K ++N + E+L
Sbjct: 196 DSLVRYVSNENYIDRLIELFPLCEDLENTDDLHRLCSIIKSFVQLNDAPLLESL 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,626
Number of Sequences: 5004
Number of extensions: 39881
Number of successful extensions: 168
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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