Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_I19
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0665 - 16774043-16774522                                         33   0.20 
09_06_0081 + 20745627-20748144,20748211-20748308                       32   0.46 
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155...    28   7.5  
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695...    28   7.5  
07_01_0257 - 1925145-1926140                                           28   7.5  
05_04_0399 - 20955319-20955838,20955939-20956201                       28   9.9  
02_01_0206 + 1388149-1388330,1388527-1388629,1388896-1388964,138...    28   9.9  

>05_03_0665 - 16774043-16774522
          Length = 159

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 231 SAKGFLSSGCRAGGSDSANRKARSATT*PPXPXGPHPXLXXPPXTSPXD 377
           +A G+ SS    G + + +R+    TT PP P  P P L  PP     D
Sbjct: 43  TANGYFSSKGTGGFAANGDRRIEIYTTAPPPPLPPPPRLALPPPPGRRD 91


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = +3

Query: 186 SAPAPKIGPQSGW*QSAKGFLSSGCRAGGSDSANRKARSATT*PPXPXGPHPXLXXPPXT 365
           SAPAP +    GW  S      S   +G S S+   A  A+T P     P P L  PP  
Sbjct: 595 SAPAPPVAAPRGWTVSPTTARYSFSDSGASSSS--AAPRASTAPLALHAPAPHLRAPPVA 652

Query: 366 SP 371
           +P
Sbjct: 653 TP 654


>09_04_0487 -
           18014469-18014660,18014935-18015016,18015297-18015548,
           18015634-18017789
          Length = 893

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 246 LSSGCRAGGSDSANRKARSATT*PPXPXGPHPXLXXPPXTSP 371
           LS+   A GS + +  A  A   PP P  P      PP  SP
Sbjct: 458 LSAAVLAAGSSTPSSAAAPAPPSPPEPPSPRHPPSPPPLRSP 499


>08_02_0450 -
           17266977-17267165,17268017-17268053,17268139-17269514,
           17285369-17286055,17286146-17286343
          Length = 828

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 246 LSSGCRAGGSDSANRKARSATT*PPXPXGPHPXLXXPPXTSP 371
           LS+   A GS + +  A  A   PP P  P      PP  SP
Sbjct: 504 LSAAVLAAGSSTPSSAAAPAPPSPPEPPSPRHPPSPPPLRSP 545


>07_01_0257 - 1925145-1926140
          Length = 331

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +3

Query: 192 PAPKIGPQSGW*QSAKGFLSSGCRAGGSDSANRKARSATT*PPXPXGP 335
           P PK  PQSG    A GF  +G   G S     K ++    P    GP
Sbjct: 82  PVPKAPPQSGSPAKASGFPYAGAAGGSSLHLVPKPKALLFAPTSMAGP 129


>05_04_0399 - 20955319-20955838,20955939-20956201
          Length = 260

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 277 SEPPARHPLLKKPFALCYH 221
           S PPA  P   +P  LCYH
Sbjct: 209 SSPPAETPTSARPVCLCYH 227


>02_01_0206 +
           1388149-1388330,1388527-1388629,1388896-1388964,
           1389684-1389803,1390352-1390482,1390840-1390881,
           1390961-1391138,1391241-1391319,1391441-1391610,
           1392503-1392629,1392731-1392846,1392926-1393033,
           1393118-1393180,1393283-1393456,1393814-1393978
          Length = 608

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +3

Query: 186 SAPAPKIGPQSGW*QSAKGFLSSGCRAGGSDSANRKARSATT*PPXPXGPHPXLXXPPXT 365
           +A A +   + GW    +G    G R+GG  +    A SAT  PP P GP P    P   
Sbjct: 2   AAAARRRRRRRGWSSGTRGTSRGGTRSGGCSAT---ASSATPSPP-PTGP-PVTASPSSA 56

Query: 366 S 368
           S
Sbjct: 57  S 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,922,962
Number of Sequences: 37544
Number of extensions: 123220
Number of successful extensions: 569
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)