Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_I18
(795 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 48 6e-06
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 38 0.011
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 38 0.011
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 36 0.044
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 36 0.044
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 34 0.13
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 32 0.54
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 32 0.54
Z37092-7|CAA85457.1| 472|Caenorhabditis elegans Hypothetical pr... 31 0.95
AY037793-1|AAK94758.1| 472|Caenorhabditis elegans GLY-1 protein. 31 0.95
AY037792-2|AAK94757.1| 472|Caenorhabditis elegans GLY-1 protein. 31 0.95
U00043-5|AAN65292.1| 505|Caenorhabditis elegans Hypothetical pr... 30 1.7
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 29 2.9
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 29 2.9
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 29 2.9
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 29 2.9
U40797-13|AAB37545.1| 193|Caenorhabditis elegans Hypothetical p... 29 5.1
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 5.1
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 28 6.7
U41271-3|AAP31439.1| 577|Caenorhabditis elegans Hypothetical pr... 28 6.7
U41271-2|AAA82444.3| 713|Caenorhabditis elegans Hypothetical pr... 28 6.7
U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical pr... 28 6.7
U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical pr... 28 6.7
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 28 6.7
AC006603-3|AAF39750.1| 204|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81457-3|CAB03815.1| 279|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL132902-13|CAL64008.1| 913|Caenorhabditis elegans Hypothetical... 28 8.9
AC084197-35|AAN63424.1| 505|Caenorhabditis elegans Puf (pumilio... 28 8.9
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 48.4 bits (110), Expect = 6e-06
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = -2
Query: 368 TKQSTSMVVFSYPPPSVDLQALSNKMREVGEVKFVDVLGMGRAIVSFFNVRDAERCVKFF 189
T Q+T +++ P Q + +++R GEV VD++ G A + F +DAER
Sbjct: 380 TPQATRVIIIRNLPSDYTWQIVRDRVRNFGEVDSVDMMAPGAARIRFATFQDAERARAAL 439
Query: 188 DGSKVDGQTIEVKY 147
GS V+G+ I V Y
Sbjct: 440 YGSTVEGRMISVDY 453
Score = 28.3 bits (60), Expect = 6.7
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Frame = -2
Query: 446 RQAVDDKRDSRAAPSAQSVHAFESDNTKQSTS--MVVF----SYPPPSVDLQALSNKMRE 285
R ++R +P + A N S+S +VF +Y VDL++L + +
Sbjct: 11 RDVKRERRSRSRSPRRSRIGAAVGSNNGNSSSNNRMVFITNIAYEARWVDLKSLVRE--K 68
Query: 284 VGEVKFVDVLG------MGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEVK 150
GEV F ++L G A+V F AE+CV+ G+TI K
Sbjct: 69 GGEVAFCELLEDRNGKPKGNAVVEFETREGAEKCVENLQKFDWKGRTIIAK 119
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -2
Query: 329 PPSVDLQALSNKMREVGEVKFVDVLGMGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEVK 150
PP+ Q L + MR+ G+V + DV G +V F D + V+ D +K E
Sbjct: 131 PPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETA 190
Query: 149 YXLKIR 132
Y +++R
Sbjct: 191 Y-IRVR 195
Score = 35.9 bits (79), Expect = 0.033
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -2
Query: 329 PPSVDLQALSNKMREVGEVKFVDVL---GMGRAIVSFFNVRDAERCVKFFDGSKVDGQTI 159
P V + + + + G +K+VD+ G A V F + RDAE V+ DG + DG+ I
Sbjct: 17 PGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRI 76
Query: 158 EVKY 147
V++
Sbjct: 77 RVEF 80
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -2
Query: 329 PPSVDLQALSNKMREVGEVKFVDVLGMGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEVK 150
PP+ Q L + MR+ G+V + DV G +V F D + V+ D +K E
Sbjct: 131 PPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETA 190
Query: 149 YXLKIR 132
Y +++R
Sbjct: 191 Y-IRVR 195
Score = 35.9 bits (79), Expect = 0.033
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -2
Query: 329 PPSVDLQALSNKMREVGEVKFVDVL---GMGRAIVSFFNVRDAERCVKFFDGSKVDGQTI 159
P V + + + + G +K+VD+ G A V F + RDAE V+ DG + DG+ I
Sbjct: 17 PGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRI 76
Query: 158 EVKY 147
V++
Sbjct: 77 RVEF 80
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 35.5 bits (78), Expect = 0.044
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = -2
Query: 410 APSAQSVHAFESDNTKQ-STSMVVFSYPPPSVDLQALSNKMREVGEVKFV--DVLGMGRA 240
AP+ +S + +D ++ S + F Y P DL A+ K+ V +V+ + + G
Sbjct: 85 APNDRSTSSSSTDGPRRLHVSNIPFKYREP--DLTAMFEKVGPVVDVEIIFNERGSKGFG 142
Query: 239 IVSFFNVRDAERCVKFFDGSKVDGQTIEV 153
V+ N DA+R F+G+ ++G+ +EV
Sbjct: 143 FVTMQNPDDADRARAEFNGTTIEGRRVEV 171
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 35.5 bits (78), Expect = 0.044
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = -2
Query: 410 APSAQSVHAFESDNTKQ-STSMVVFSYPPPSVDLQALSNKMREVGEVKFV--DVLGMGRA 240
AP+ +S + +D ++ S + F Y P DL A+ K+ V +V+ + + G
Sbjct: 85 APNDRSTSSSSTDGPRRLHVSNIPFKYREP--DLTAMFEKVGPVVDVEIIFNERGSKGFG 142
Query: 239 IVSFFNVRDAERCVKFFDGSKVDGQTIEV 153
V+ N DA+R F+G+ ++G+ +EV
Sbjct: 143 FVTMQNPDDADRARAEFNGTTIEGRRVEV 171
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 272 KFVDVLGMGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEVK 150
+F + + G V + N+ DAE+ +K DG ++DG + V+
Sbjct: 168 RFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVE 208
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 31.9 bits (69), Expect = 0.54
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Frame = -2
Query: 422 DSRAAPSAQSVHAFESDNTKQSTSMVVFSYPPPSVDLQALSNKMREVGEVKF----VDVL 255
D RAAP + + + DN SY DL+ + ++G+V
Sbjct: 8 DRRAAPDINGLTSLKIDN---------LSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQ 58
Query: 254 GMGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEV 153
G V F+ RDAE + DG VDG+ + V
Sbjct: 59 SKGFGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 31.9 bits (69), Expect = 0.54
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Frame = -2
Query: 422 DSRAAPSAQSVHAFESDNTKQSTSMVVFSYPPPSVDLQALSNKMREVGEVKF----VDVL 255
D RAAP + + + DN SY DL+ + ++G+V
Sbjct: 8 DRRAAPDINGLTSLKIDN---------LSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQ 58
Query: 254 GMGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEV 153
G V F+ RDAE + DG VDG+ + V
Sbjct: 59 SKGFGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
>Z37092-7|CAA85457.1| 472|Caenorhabditis elegans Hypothetical
protein F44F4.6 protein.
Length = 472
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 177 FGAVKEFDTTLGVAHVEEADDRPTHAQHIHELHLADLPHLVAEGLEVHARRRITKDHH 350
FG VK+F GV +EE RP H+L+L P L+ RR ++ D H
Sbjct: 369 FGKVKDFSCVFGVEDIEEIMTRPELV--AHKLYLEFQPAAFMCMLKEVRRRSLSPDAH 424
>AY037793-1|AAK94758.1| 472|Caenorhabditis elegans GLY-1 protein.
Length = 472
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 177 FGAVKEFDTTLGVAHVEEADDRPTHAQHIHELHLADLPHLVAEGLEVHARRRITKDHH 350
FG VK+F GV +EE RP H+L+L P L+ RR ++ D H
Sbjct: 369 FGKVKDFSCVFGVEDIEEIMTRPELV--AHKLYLEFQPAAFMCMLKEVRRRSLSPDAH 424
>AY037792-2|AAK94757.1| 472|Caenorhabditis elegans GLY-1 protein.
Length = 472
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 177 FGAVKEFDTTLGVAHVEEADDRPTHAQHIHELHLADLPHLVAEGLEVHARRRITKDHH 350
FG VK+F GV +EE RP H+L+L P L+ RR ++ D H
Sbjct: 369 FGKVKDFSCVFGVEDIEEIMTRPELV--AHKLYLEFQPAAFMCMLKEVRRRSLSPDAH 424
>U00043-5|AAN65292.1| 505|Caenorhabditis elegans Hypothetical
protein T26A5.5b protein.
Length = 505
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 527 SATLAGRSSWPGRIQWPPASERRWSSFGARQRR 625
S L + W G QWP A +RW SF R ++
Sbjct: 104 SPELVRQIDWVGN-QWPDALRQRWISFNGRDKK 135
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
protein T26A5.5a protein.
Length = 1076
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 527 SATLAGRSSWPGRIQWPPASERRWSSFGARQRR 625
S L + W G QWP A +RW SF R ++
Sbjct: 104 SPELVRQIDWVGN-QWPDALRQRWISFNGRDKK 135
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 248 GRAIVSFFNVRDAERCVKFFDGSKVDGQTIEVK 150
G A V + +VRDAE V+ DGS++ G V+
Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 248 GRAIVSFFNVRDAERCVKFFDGSKVDGQTIEVK 150
G A V + +VRDAE V+ DGS++ G V+
Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 248 GRAIVSFFNVRDAERCVKFFDGSKVDGQTIEVK 150
G A V + +VRDAE V+ DGS++ G V+
Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -2
Query: 473 TSALDGNYSRQAVDDKRDSRAAPSAQSVHAFESDNTKQSTSMVVFSYPP 327
T++ G+ + KRDS + ++S + ESD+ +S+S VV + PP
Sbjct: 29 TNSGSGDKDKPMWKSKRDSSRSSRSRSRSSSESDSRSRSSSPVVKNSPP 77
>U40797-13|AAB37545.1| 193|Caenorhabditis elegans Hypothetical
protein C28C12.2 protein.
Length = 193
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -3
Query: 451 TAGRRSTISETAGPPPPRSPYTHLNLTTPSNRPAWWSLVIRLRAWTSRPSA 299
T S+I+ + P P P HL+ + S RPA V R W PSA
Sbjct: 115 TLPAESSIAVSPPPRPSSEPLRHLSQVSLSARPASTEPVRRDVHWRVHPSA 165
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 472 PRHSMVTTAGRRSTISETAGPPPP 401
P S+ +TAG ST S +A PPPP
Sbjct: 2029 PTLSVSSTAGGASTSSSSAPPPPP 2052
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -2
Query: 353 SMVVFSYPPPSVDLQALSNKMREVGEVKFV--DVLGMGRAIVSFFNVRDAERCVKFFDGS 180
S + F + P DL+ + K V +V+ + + G V+ +DAER + GS
Sbjct: 158 SNIPFRFRDP--DLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGS 215
Query: 179 KVDGQTIEV 153
++G+ IEV
Sbjct: 216 MIEGRKIEV 224
>U41271-3|AAP31439.1| 577|Caenorhabditis elegans Hypothetical
protein C46H3.2b protein.
Length = 577
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 444 PAVVTIECRGVFELLSLDDVPLRAGLVPARHLL 542
PA ++++ + +LL DD P+R LVP +L
Sbjct: 423 PAFLSVKPKSTSDLLFGDDTPIRLNLVPTGKIL 455
>U41271-2|AAA82444.3| 713|Caenorhabditis elegans Hypothetical
protein C46H3.2a protein.
Length = 713
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 444 PAVVTIECRGVFELLSLDDVPLRAGLVPARHLL 542
PA ++++ + +LL DD P+R LVP +L
Sbjct: 559 PAFLSVKPKSTSDLLFGDDTPIRLNLVPTGKIL 591
>U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical
protein C14F11.4a protein.
Length = 345
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -3
Query: 547 TPSKCR-AGTRPARXXXXXXXXXXXTPRHSMVTT--AGRRSTISETAGPPPPRSP 392
TPS+ A TRP + +TT + +R +++ A P PPRSP
Sbjct: 271 TPSEASYASTRPKTERSSSHKSASTVTSSATITTLDSAKRKPLAKNASPKPPRSP 325
>U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical
protein C14F11.4b protein.
Length = 341
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -3
Query: 547 TPSKCR-AGTRPARXXXXXXXXXXXTPRHSMVTT--AGRRSTISETAGPPPPRSP 392
TPS+ A TRP + +TT + +R +++ A P PPRSP
Sbjct: 267 TPSEASYASTRPKTERSSSHKSASTVTSSATITTLDSAKRKPLAKNASPKPPRSP 321
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -2
Query: 353 SMVVFSYPPPSVDLQALSNKMREVGEVKFV--DVLGMGRAIVSFFNVRDAERCVKFFDGS 180
S + F + P DL+ + K V +V+ + + G V+ +DAER + GS
Sbjct: 158 SNIPFRFRDP--DLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGS 215
Query: 179 KVDGQTIEV 153
++G+ IEV
Sbjct: 216 MIEGRKIEV 224
>AC006603-3|AAF39750.1| 204|Caenorhabditis elegans Hypothetical
protein B0524.5 protein.
Length = 204
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 416 RAAPSAQSVHAFESDNTKQSTSMVVFSYPPPSVDLQALSNKMREVG 279
RAAP + F ++T ST S PP+ ++ + N R +G
Sbjct: 48 RAAPPRKKKEIFLEEHTPPSTDTDEVSTIPPAEQIRIVENHRRRIG 93
>Z81457-3|CAB03815.1| 279|Caenorhabditis elegans Hypothetical
protein C01G12.5 protein.
Length = 279
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +3
Query: 387 VYGLRGGGGPAVSLIVDRLPAVVTIECRGVFELLSLDDVPLRAGLVPARHLLGVHHGQAV 566
V G G G A ++++ R A VTI R L LR+G VP H+L + A
Sbjct: 11 VTGSSNGIGRATAILLAREGAKVTITGRNAQRLEETKQEILRSG-VPEDHVLSIIADLAT 69
Query: 567 FSGR 578
SG+
Sbjct: 70 ESGQ 73
>AL132902-13|CAL64008.1| 913|Caenorhabditis elegans Hypothetical
protein Y71A12B.17 protein.
Length = 913
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 48 SCKKNVTSFIELLQPTIPLILSSVRHGITYLQXVLHFNSLSVH 176
+C K+V IE P L ++++ G TY+Q V+ +S++
Sbjct: 540 NCLKHVIEAIETFSPDGSLDVNTMWSGHTYIQGVMCLTEISIN 582
>AC084197-35|AAN63424.1| 505|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 11 protein.
Length = 505
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/75 (24%), Positives = 29/75 (38%)
Frame = -3
Query: 388 THLNLTTPSNRPAWWSLVIRLRAWTSRPSATRCGRSAR*SSWMCWAWVGRSSASSTCATP 209
T +TTP+ P +I L S P+ + + WA G + S + P
Sbjct: 82 TSTPMTTPARHPQQALRLIDLENNASSPNTLNSSTRSYKCTLPIWAGDGEGNVSDSVTLP 141
Query: 208 SVVSNSLTAPKWTDR 164
V++N TD+
Sbjct: 142 DVLANDALVEFATDK 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,447,498
Number of Sequences: 27780
Number of extensions: 329266
Number of successful extensions: 1380
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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