Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_I18
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.20 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   10.0 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   10.0 

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -2

Query: 404  SAQSVHAFESDNTKQSTSMVVFSYPPPSVDLQALSNKMREVGEVKFVDVLGMGRAIVSFF 225
            SAQSV A  + N    T+ +    PP  V  Q  S + ++  + + +     G++I+   
Sbjct: 944  SAQSVVASSASNVTNVTTNLTTILPPVKVQSQQQSQQSQQQQQQQTIVTNQAGKSILQTA 1003

Query: 224  NVR 216
            N++
Sbjct: 1004 NIK 1006


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 394 PYTHLNLTTPSNRPAWWSL 338
           P+  L L   + RPA+WSL
Sbjct: 317 PFPFLMLPLGAGRPAFWSL 335


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 374 QIQMRVRTARRGRPCCL 424
           +I+++ +TARRG P  L
Sbjct: 780 EIKLKNQTARRGEPAVL 796


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 364 SNRPAWW 344
           S+RPAWW
Sbjct: 24  SHRPAWW 30


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 109 NINGMVGCKSSI 74
           N+NG V C SSI
Sbjct: 151 NLNGTVNCTSSI 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,451
Number of Sequences: 438
Number of extensions: 3831
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)