Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_I17
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 260 GEFGIYLVSDGGSKPYRCKIKAPGF 186
           G+  I++ +  G KPY CK    GF
Sbjct: 189 GQLVIHMRTHTGEKPYVCKACGKGF 213



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 227 GSKPYRCKIKAPGFAHLAALEK 162
           G  PYRC I    FA  A L +
Sbjct: 88  GEDPYRCNICGKTFAVPARLTR 109


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 287 TYTAVEAPKGEFGIYLV---SDGGSKPY 213
           TY+   +P G+FG Y++   S GG K +
Sbjct: 477 TYSLALSPDGQFGNYIIKNNSVGGKKEW 504


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 465 DAPVPPHHRAVPQRHAPRGGQDRRRQAHPALPGG 364
           D PVPP     P ++   G   R R+    +P G
Sbjct: 141 DLPVPPLTEVFPDKYMDSGIFSRAREEANVVPEG 174


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 375 LPGGDEDVHGGADP 334
           LPG D+D+ G A P
Sbjct: 480 LPGADDDLFGPASP 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,153
Number of Sequences: 438
Number of extensions: 3798
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)