Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_I14
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.3  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   5.2  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.1  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   9.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 684  VSPTQSSGPSSFTAAPAPLSVPVTAPCHPPTPL 586
            V+P Q   P   T APAP S P      PP P+
Sbjct: 1455 VAPVQPKAPGMVTNAPAPSSAPA-----PPAPV 1482



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = -1

Query: 693  PXRVSPTQSSGPSSFTAAPAPLSVPVTAPCHPPTPLQVFFIP 568
            P   +PT    P S    P+   +P   P  PP PL     P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 684 VSPTQSSGPSSFTAAPAPLSVPVTAPCHPPTPLQVFF 574
           +S   S  PS+ +  PAP+S   T   +P T LQ  F
Sbjct: 178 LSVAASPNPSTPSNGPAPVSTTATPSRNPVTRLQRIF 214


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 364 INIVVYTFPYRKVSGVPQNVIILSKN*RQTHKS 266
           IN+    F Y  +SG+  N  +LSK+ R  + +
Sbjct: 745 INVYKIHFQYNNISGLADNYTLLSKHDRAMYNN 777


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 660 PSSFTAAPAPLSVPVTAPCHPPTPLQVFFIPFTIGQLS 547
           P+S +  P  LS+  + P     P   F  PFT  +LS
Sbjct: 74  PTSLSINPKKLSLSFSFPLSQKRPFPNFLHPFTGSELS 111


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 388 TLS*NIKCINIVVY--TFPYRKVSGVPQNVIILSKN 287
           TLS ++KC+N V Y    PY+  S    N + +  N
Sbjct: 465 TLSGHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSN 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,052
Number of Sequences: 5004
Number of extensions: 46243
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)