Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_I12
         (787 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    32   2.0  
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    32   2.0  
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    32   2.0  
D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein.               31   6.2  
BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase...    31   6.2  
U10324-1|AAA20994.1|  671|Homo sapiens NF90 protein protein.           30   8.2  

>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
            (AA -19 to 4525) protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
 Frame = +2

Query: 284  NFPAQGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRKCSLVASRPPLSC 448
            N    GC   CS   FKC  G     HW+    +            C+  A+RPP  C
Sbjct: 1005 NSDEAGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
            lipoprotein-related protein 1 (alpha-2-macroglobulin
            receptor) protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
 Frame = +2

Query: 284  NFPAQGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRKCSLVASRPPLSC 448
            N    GC   CS   FKC  G     HW+    +            C+  A+RPP  C
Sbjct: 1005 NSDEAGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
            protein protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
 Frame = +2

Query: 284  NFPAQGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRKCSLVASRPPLSC 448
            N    GC   CS   FKC  G     HW+    +            C+  A+RPP  C
Sbjct: 1005 NSDEAGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062


>D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein.
          Length = 1203

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 509  LARYLMRKAALVLAEGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPCS 688
            LA +++  A  +++  SSC+S+  + P  P D         + Q   KAY +LT+  P  
Sbjct: 938  LAGFVLPNAEDIISSPSSCSSSTTSLPTSPGDKCRMAPEHVTAQKMKKAY-YLTQKIPDQ 996

Query: 689  D 691
            D
Sbjct: 997  D 997


>BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase-like
            family, member 4 protein.
          Length = 1199

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 509  LARYLMRKAALVLAEGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPCS 688
            LA +++  A  +++  SSC+S+  + P  P D         + Q   KAY +LT+  P  
Sbjct: 934  LAGFVLPNAEDIISSPSSCSSSTTSLPTSPGDKCRMAPEHVTAQKMKKAY-YLTQKIPDQ 992

Query: 689  D 691
            D
Sbjct: 993  D 993


>U10324-1|AAA20994.1|  671|Homo sapiens NF90 protein protein.
          Length = 671

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 551 EGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPCSDCTRVSR 709
           +GSS  + + N   PP D S+  AGE   +   +  R + RA P       SR
Sbjct: 54  KGSSEQAESDNMDVPPEDDSKEGAGEQKTEHMTRTCRGVMRAGPGGQSASYSR 106


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,789,299
Number of Sequences: 237096
Number of extensions: 2156771
Number of successful extensions: 5692
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5682
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)