Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_I09
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    31   0.13 
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    28   1.6  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   4.9  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   4.9  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   6.4  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   8.5  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -2

Query: 683 IEVMNARNLVXTDSNGLCDSYVRVALLPEDSFANVVKPK--TQTHSKNLFPLYDEMFLIP 510
           + +  A +L   D NGL D+Y+ V       F    KP   T+   ++L P+++E   IP
Sbjct: 473 VHINRAEDLSKQDVNGLSDAYITV------GFHKFGKPLYCTRVVKQDLNPIWNEYAFIP 526

Query: 509 LSPEQ 495
           + P+Q
Sbjct: 527 VFPDQ 531


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 179 NIYDRNEYY*PNEKNCLLGIFCLCFLMKSRACLSPXSRVQSLDRIAIDSVGFG-*RQMLL 355
           +IY+ + Y  PN +  L GI+    ++  + C SP    +    I + ++GFG   QML 
Sbjct: 650 DIYEEDTYE-PNSEILLAGIWLCINILWPKQCTSPSQEDKERASI-LQNLGFGECLQMLQ 707

Query: 356 RQAS-DGRGRVR 388
             +S D R RV+
Sbjct: 708 NHSSPDVRERVK 719


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 385 DTPAPIGSLPQQHLPLSKPNTVDGDAIKALDSRXGRQASSRFHQKTKT 242
           DTP     +  QH P+S   T  GD+   LDS+ G  +S +   K  +
Sbjct: 61  DTP----KVSSQHSPVSSAYT--GDSTTDLDSKSGHSSSQKLSNKVSS 102


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 409 YLHFSEIPDTPAPIGSLPQQHLPLS 335
           Y + S  P TP+P G  P  H P+S
Sbjct: 267 YQNSSLNPSTPSPFGGSPVMHPPVS 291


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 541 NRFLLCVCVFGFTTFAKESSGSSATRTYESHNPFE 645
           +R L+ +C++ F TFA        T+ Y +H P +
Sbjct: 4   SRLLILICLYSFVTFAY----PKVTQDYRNHLPIK 34


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -2

Query: 689 LKIEVMNARNLVXTDSNGLCDSYVRVALLPEDSFANVVKPKTQTHSKNLFPLYDEMFLIP 510
           ++I + +A NL        CDSY R+       F  VV       + N+ P +DE    P
Sbjct: 706 IRIHLRSANNLHSKIPGKKCDSYARIMSHNTKQFRTVV------IASNVNPFWDEYMYAP 759

Query: 509 L 507
           +
Sbjct: 760 V 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,463
Number of Sequences: 5004
Number of extensions: 68087
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)