Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_I09
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   4.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   5.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.2  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   5.2  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   5.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.1  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 439 SVSNTFVGEAYLHFSEIPDTPAPIGSLPQ 353
           S+S   V  A +++++  ++P+P GS PQ
Sbjct: 42  SLSAAAVAAAAVNYAQQHNSPSPTGSSPQ 70


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 333 NPTLSMAMRSRLWTRXQGDRQARDFIKKQRQKM 235
           NP LSM  R   +T+   +RQ    +K   Q +
Sbjct: 711 NPPLSMLQRMAEFTKLDTNRQVNSAVKSTIQSL 743


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 442 TYPWSLTTKCNSPSAMPRCSGLRGMRNISSYNGNR 546
           T P S   KC SP      SG     N+SS + N+
Sbjct: 582 TSPNSAVRKCMSPINGSGASGSGSAENLSSGSNNQ 616


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = +1

Query: 565 VFGFTTFAKESSGSSATRTYESHNPFESVXTRFLAFM 675
           +FG+ ++  E+   S + ++E H+P  +  T ++ F+
Sbjct: 34  LFGWGSYGPEAGNVSCSVSWEVHDPVTNSDT-YIGFL 69


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 437 CEQHVCGGGVSTLQRDTGHARAH 369
           C+ H+CG   S      GH R H
Sbjct: 43  CKCHLCGKAFSRPWLLQGHIRTH 65


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 547 FLLCVCVFGFTTFAKESSGSSATRTYES 630
           +LL +C+FG    A +   ++ +R  E+
Sbjct: 7   WLLSICLFGLQEIAIQPGSNALSRNVEA 34


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 580 TFAKESSGSSATRTYESHNPFE 645
           TF   S  ++ T+T++ + PFE
Sbjct: 47  TFTSSSGDNTYTKTFKMNVPFE 68


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 580 TFAKESSGSSATRTYESHNPFE 645
           TF   S  ++ T+T++ + PFE
Sbjct: 49  TFTSSSGDNTYTKTFKMNVPFE 70


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 566 TQTHSKNLFPLYDEMFLIPLSPEQRGIADGLLHF 465
           T   S  L P+    ++ P+SPEQ  +   L++F
Sbjct: 312 TSGSSGILTPVSPYGYVKPISPEQEELIHRLVYF 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,090
Number of Sequences: 438
Number of extensions: 4955
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)