Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_I08
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   7.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.4  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 573 LCQDTRLGQRAVF 535
           LC DTRL + AVF
Sbjct: 68  LCADTRLNKLAVF 80


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 633 EECLRAHPYVFSSXRLNRKSIADNAGNGHGP 725
           E+CL  + +V    RL  K      GNG GP
Sbjct: 124 EDCLYLNIWVPQKYRLRHKGDGSPGGNG-GP 153


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 633 EECLRAHPYVFSSXRLNRKSIADNAGNGHGP 725
           E+CL  + +V    RL  K      GNG GP
Sbjct: 124 EDCLYLNIWVPQKYRLRHKGDGSPGGNG-GP 153


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 527 EGAVTQCRIGNDC 489
           + AV QC+ GN+C
Sbjct: 217 KNAVYQCKYGNNC 229


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 527 EGAVTQCRIGNDC 489
           + AV QC+ GN+C
Sbjct: 14  KNAVYQCKYGNNC 26


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 112 YCVITKNPHSFRLE 71
           YC  TKNP+  R++
Sbjct: 314 YCAATKNPNFDRMQ 327


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 503 IGNDCRRYRVGVPFSISKEEDIMYDIMT 420
           I  +CR     VPF  + + + + D++T
Sbjct: 443 INYNCRSLVASVPFFANADSNFVSDVVT 470


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 503 IGNDCRRYRVGVPFSISKEEDIMYDIMT 420
           I  +CR     VPF  + + + + D++T
Sbjct: 411 INYNCRSLVASVPFFANADSNFVSDVVT 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,800
Number of Sequences: 438
Number of extensions: 4159
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)