Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_I04
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    30   0.42 
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    29   0.56 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    26   5.2  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   6.9  

>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 415 ETFSLADSSSGAKRIFNTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSLXT 576
           E+ S + SSS  KR+F  H    ES   +S+ +   A  +     +YSNVS+ T
Sbjct: 221 ESVSFSSSSSVIKRMFKEH----ESVLRNSMDDFHTAISSSEIELNYSNVSVST 270


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 102  PHIKNKFKGDCERFVSFFYEISSPXFGVNFKI 197
            P ++ KF+G  E  V+FFY ++    G+  K+
Sbjct: 1212 PELRKKFEGQPEHVVNFFYYVAEELRGIMAKL 1243


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 161  FVKKTNKTFTIALKLIFDMGIINSSKTSI 75
            F+ +T+KT  +ALK  FDM   N+S + +
Sbjct: 1070 FMSETSKTLNMALKSEFDMTDFNNSGSKL 1098


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 162 ISSPXFGVNFKITKLNNKTKGTIVICA*QLLDIIESDMCLI 284
           I++P +G N   T L    +G  + CA   LDI+ S   ++
Sbjct: 218 INTPNWGTNTFSTPLKGDYQGQNLACAVTALDILSSSFSIM 258


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 555 FKCLSXYWISFRRNLCPXFFFSSLWPGI 638
           F   S +W  F  +L P F   ++WP +
Sbjct: 102 FLFASIFWAFFHSSLSPTFELGAVWPPV 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,833
Number of Sequences: 5004
Number of extensions: 53354
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)