Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_I03
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    27   3.4  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = -3

Query: 480 YILEKFPTWTNPDFRSKEDGGLSYRWTKDQLIDNLMLYWSTKSIVTSMRLYAESFSSRHF 301
           Y LE+   + NP+      G     WT D  +   ++    K  +T   LYA SF     
Sbjct: 72  YSLEELDRFDNPEKARALRGA---EWTFDADLFYSLVRLMKK--ITDRELYAPSFDHAIG 126

Query: 300 DLKLDEIQVQVPTWVL--QAKYELAYQPP 220
           D  +D+I V+    +L  +  Y L  +PP
Sbjct: 127 DPVVDDICVEPKNRILIFEGNYLLLNKPP 155


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 408 RWTKDQLIDNLMLYWSTKSIVTSMRLYAE 322
           +W  DQ I    LY + + +V  +R Y E
Sbjct: 291 KWANDQRIGQEELYEAAEKVVLELRSYTE 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,332
Number of Sequences: 5004
Number of extensions: 36126
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)