Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_I01
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    68   2e-12
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    61   1e-10
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    58   1e-09
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    54   2e-08
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    45   1e-05
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    36   0.005
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       27   3.9  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   5.1  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    26   6.7  

>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 35/96 (36%), Positives = 59/96 (61%)
 Frame = -3

Query: 465 EFCEARGVKITAYSPLGSPDRPWAKPDDPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSG 286
           ++CE++G+++ AY+PL   ++            + +L AIA +  K+ AQ++IRY +  G
Sbjct: 176 DYCESKGIQLAAYAPLVHGEK----------FGNKQLLAIASKYNKSEAQIMIRYCLQRG 225

Query: 285 NIVIPKSVTRSRIASNFDVLDFKLSREDVALIDSFD 178
            IV+PKS T  RI  N DV DF++S+ED+  + + D
Sbjct: 226 FIVLPKSSTPRRIKENGDVFDFEISKEDMEKLYNLD 261



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = -2

Query: 643 DXXDTXKXXXPLVKEGLVKSIGVSNFNSKQXERLLQ-HATVKPVVNQVECHPYLNQKR 473
           D  ++ K     V+EG +++IGVSNF     + LL  H  + P VNQ+E HP+ +Q++
Sbjct: 116 DRIESWKALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVNQIELHPFCSQQK 173


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 27/68 (39%), Positives = 44/68 (64%)
 Frame = -2

Query: 682 PADQSGXIQXSDVDXXDTXKXXXPLVKEGLVKSIGVSNFNSKQXERLLQHATVKPVVNQV 503
           P ++ G +   DV   +T +    L++ G V+ IG+SNFN++  +R+L+ A VKP ++Q+
Sbjct: 130 PRNEKGELIYEDVPIEETWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVKPTIHQM 189

Query: 502 ECHPYLNQ 479
           E HPYL Q
Sbjct: 190 ELHPYLPQ 197



 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
 Frame = -3

Query: 444 VKITAYSPLGSPDRPWAKPDDPQLMEDPKLKAIADRLGK--TVAQVLIRYQIDSGNIVIP 271
           + ++AYSPL + +  +   D  +L+E   L  IA+  G+  T A + I + +  G  V+P
Sbjct: 209 IHVSAYSPLANQNDAY-NSDISKLIEHKTLVDIANARGEGITPANIAISWAVKRGTSVLP 267

Query: 270 KSVTRSRIASNF 235
           KSV  SRI SNF
Sbjct: 268 KSVNESRIVSNF 279


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 28/68 (41%), Positives = 40/68 (58%)
 Frame = -2

Query: 682 PADQSGXIQXSDVDXXDTXKXXXPLVKEGLVKSIGVSNFNSKQXERLLQHATVKPVVNQV 503
           P D+ G +        +T K    L++ G V+ IG+SNFN    ER+L+ A VKP V+Q+
Sbjct: 131 PKDKDGNLIYEKNPIEETWKAMEKLLETGKVRHIGLSNFNDTNLERILKVAKVKPAVHQM 190

Query: 502 ECHPYLNQ 479
           E HP+L Q
Sbjct: 191 ELHPFLPQ 198



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
 Frame = -3

Query: 447 GVKITAYSPLGSPDRPWAKPDDPQLMEDPKLKAIADRLGKTV--AQVLIRYQIDSGNIVI 274
           G+ +TAYSP G+ +  + +   P+L+E   ++ IA   G+ V  A + + + I  G  VI
Sbjct: 209 GIHVTAYSPFGNQNTIY-ESKIPKLIEHETIQKIAKSKGEGVTGATIAVSWAITRGTSVI 267

Query: 273 PKSVTRSRIASNFDVLDFKLSREDVALIDSFDCGGRLVPMTAS 145
           PKSV   RI SNF  +   L++ED+  I+S     R    T S
Sbjct: 268 PKSVNEQRIKSNFKYI--PLTKEDMDEINSIGIRARFNQATFS 308


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 33/102 (32%), Positives = 55/102 (53%)
 Frame = -3

Query: 483 TRNALKEFCEARGVKITAYSPLGSPDRPWAKPDDPQLMEDPKLKAIADRLGKTVAQVLIR 304
           +++ + ++C++  + I AYSPL    R          + D KL  IA +L  +VAQ+LIR
Sbjct: 177 SQDDIVKYCQSHDIAIEAYSPLTHGIR----------LNDEKLVPIAKKLNISVAQLLIR 226

Query: 303 YQIDSGNIVIPKSVTRSRIASNFDVLDFKLSREDVALIDSFD 178
           + +  G I I KS  +  + S+ DV +F +  + V  + SFD
Sbjct: 227 WSLQKGYIPIIKSTKKEHMLSDLDVFNFTIPDDVVQELSSFD 268



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 625 KXXXPLVKEGLVKSIGVSNFNSKQXERLL-QHATVKPVVNQVECHPYLNQ 479
           K     V  G ++S+GVSN+  K  + L   +    P VNQ+E HP+L+Q
Sbjct: 129 KAMEEFVDSGDIRSVGVSNYGVKHLQELYASNPKFYPCVNQIELHPFLSQ 178


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/36 (55%), Positives = 25/36 (69%)
 Frame = -2

Query: 598 GLVKSIGVSNFNSKQXERLLQHATVKPVVNQVECHP 491
           GLV S+GVSNF     E LL+ +T+ P VNQ+E HP
Sbjct: 135 GLVHSVGVSNFRIPDLEELLKTSTITPRVNQIEFHP 170



 Score = 30.3 bits (65), Expect = 0.31
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = -3

Query: 471 LKEFCEARGVKITAYSPLGSPDRPWAKPDDPQLMEDPKLKAIADRLGKTVAQVLIRYQID 292
           L EFC+++G+ +  Y PL    R      D Q       K++  +   +  Q+L+++   
Sbjct: 179 LVEFCQSKGIIVEGYGPLSPLVR------DAQGPVAEFTKSLESKYHVSDTQILLKWAYS 232

Query: 291 SGNIVI--PKSVTRSRIASNFDVLDFKLSREDV 199
            G I I     + R +   NFD   F L + D+
Sbjct: 233 KGVIPITTTSKIERMKECLNFD--SFTLDKADI 263


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 604 KEGLVKSIGVSNFNSKQXERLLQHATVKPVVNQVECHPYLNQ 479
           KEG +  IGVSN+N    E ++      P +NQVE   + N+
Sbjct: 130 KEGRINKIGVSNYNIHHLEEIISLGLPLPAINQVEFSAFNNR 171


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 495 ILTSTRNALKEFCEARGVKITAYSPLGSPDRPWAKPDD 382
           IL ST  A  +   A G ++ +Y P GS +  + KP D
Sbjct: 110 ILLSTLFADSDHFSATGFEVLSYIPKGSKNNGFHKPTD 147


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 166 PTAAVERVDEGDVLPGELEVEHVKVARDPTPRHGL 270
           PT  VE      + PGE    H+K+   P  + GL
Sbjct: 875 PTFTVESSQPFSLSPGERREIHIKIRAKPNSQEGL 909


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = -3

Query: 399 WAKPDDPQLMEDPKL-----KAIADRLGKTVAQVLIRYQ 298
           W++ +D +L+   KL     + IA  +G+T  Q L RYQ
Sbjct: 61  WSREEDEKLLHLAKLLPTQWRTIAPIVGRTATQCLERYQ 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,281
Number of Sequences: 5004
Number of extensions: 38764
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)