Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_H21
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    29   5.5  
03_01_0159 + 1298002-1298070,1298181-1298264,1300354-1300506,130...    28   9.6  

>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +3

Query: 522 GHSPPRLVTWRPRPGSA-PRTQVKRPRRGPDLRSLTRHTDDPNLTVLHIYRXNYTLSFPS 698
           G S  R   W  R G   PR+    PRR      + RH  DP LTV  + R    L    
Sbjct: 47  GGSCTRFSPWACRQGRGDPRSNPSNPRRPSHESDVPRHPLDP-LTVREVNRVRELLRAHP 105

Query: 699 NFSLARAS 722
            F+ A +S
Sbjct: 106 LFASAPSS 113


>03_01_0159 +
           1298002-1298070,1298181-1298264,1300354-1300506,
           1300589-1300702,1300814-1300876
          Length = 160

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 424 SQNVALGRVRTTRSRWRHNF-KAFLEYNE*WADGVILRLVW 543
           S  +A GR+   R  WR N    F+   E  ADG +  ++W
Sbjct: 2   SGGIARGRLAEERKAWRKNHPHGFVAKPETLADGTVNLMIW 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,681,497
Number of Sequences: 37544
Number of extensions: 337029
Number of successful extensions: 824
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)