Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_H19
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 49 6e-07
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 46 4e-06
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 44 3e-05
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 43 4e-05
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 36 0.008
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 34 0.019
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 34 0.026
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 33 0.045
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 32 0.10
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 32 0.10
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 32 0.10
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 31 0.24
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 30 0.31
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 29 0.55
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 28 1.3
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 28 1.7
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 27 2.9
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.1
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 26 6.8
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 6.8
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 26 6.8
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 25 9.0
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 9.0
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 49.2 bits (112), Expect = 6e-07
Identities = 28/77 (36%), Positives = 38/77 (49%)
Frame = -1
Query: 480 EGIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNP 301
EG A + +A KA+ IDP + R A Y G F+ A+ED T L L+P
Sbjct: 89 EGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDALTCLSLDP 148
Query: 300 NHANARKYLGETLVALG 250
+HA A LG ++LG
Sbjct: 149 HHARAFGRLGRAKLSLG 165
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 46.4 bits (105), Expect = 4e-06
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Frame = -1
Query: 453 RHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYL 274
++++A++ +A+ D RN + G LY ++ A++ + +++LNP Y+
Sbjct: 599 KYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAYSRAIRLNP-------YI 651
Query: 273 GETLVALGRSYED-ENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAE 97
E LG YE NQI++A AY+ + P + + L L+ ++
Sbjct: 652 SEVWYDLGTLYESCHNQISDALDAYQRAAELDPTNPHIKARLQLLRGPNNEQHKIVNAPP 711
Query: 96 LLLPGLTGAK 67
+P + AK
Sbjct: 712 SNVPNVQTAK 721
Score = 36.7 bits (81), Expect = 0.004
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Frame = -1
Query: 477 GIEHFKAGRHSEAFQCLNKALSIDPR--NVEGLVAR-GALYANSGTFKKAIEDFETSLKL 307
GI + + G H A + + L +DP V + R G +Y F +++E F L
Sbjct: 445 GILYDRYGSHEHAEEAFMQCLRMDPNFEKVNEIYFRLGIIYKQQHKFAQSLELFRHILDN 504
Query: 306 NPNHANARKYLGETLVALGRSYEDENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTT 127
P + +G YE + A++AYE LA P H + L +L + +
Sbjct: 505 PPKPLTVL----DIYFQIGHVYEQRKEYKLAKEAYERVLAETPNHAKVLQQLGWLCHQQS 560
Query: 126 AS 121
+S
Sbjct: 561 SS 562
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = -1
Query: 447 SEAFQCLNKALSI--DPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYL 274
S A+ +AL DP++ + G LY G+ + A E F L+++PN + +
Sbjct: 419 SRAYSAYRQALYHLKDPKDPKLWYGIGILYDRYGSHEHAEEAFMQCLRMDPNF----EKV 474
Query: 273 GETLVALGRSYEDENQITEAQKAYEDCL 190
E LG Y+ +++ ++ + + L
Sbjct: 475 NEIYFRLGIIYKQQHKFAQSLELFRHIL 502
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 43.6 bits (98), Expect = 3e-05
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Frame = -1
Query: 417 LSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLG-----ETLVAL 253
L ++P+NVE LV RG + SG KAI F+ +LKL+P+ A+ E
Sbjct: 170 LRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTKNQ 229
Query: 252 GRSYEDENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAELL 91
G + +A + Y + L I P ++E L ++ T L P E L
Sbjct: 230 GNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKL--YMNRATVLLRLKRPEEAL 281
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 43.2 bits (97), Expect = 4e-05
Identities = 19/69 (27%), Positives = 38/69 (55%)
Frame = -1
Query: 450 HSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLG 271
HS+A +C+N+A+ +DP +G ++ + ++K+ F ++++N H NA LG
Sbjct: 447 HSQALKCINRAIQLDPTFEYAYTLQGHEHSANEEYEKSKTSFRKAIRVNVRHYNAWYGLG 506
Query: 270 ETLVALGRS 244
+ GR+
Sbjct: 507 MVYLKTGRN 515
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = -1
Query: 477 GIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPN 298
G+ + K GR+ +A +A I+P N + G +Y +KKA++ ++ + KL+
Sbjct: 506 GMVYLKTGRNDQADFHFQRAAEINPNNSVLITCIGMIYERCKDYKKALDFYDRACKLDEK 565
Query: 297 HANARKYLGETLVAL 253
+ AR + L+ L
Sbjct: 566 SSLARFKKAKVLILL 580
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 375 GALYANSGTFKKAIEDFETSLKLNPNHANA 286
G +Y +G KKA + F ++ +NP + +A
Sbjct: 122 GTMYKKAGFLKKATDCFVEAVSINPYNFSA 151
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 375 GALYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALGR 247
G L N+ F KAI F+++L+++P NA LGE GR
Sbjct: 657 GVLELNAKNFHKAIVHFQSALRISPKDTNAWSGLGEAYARSGR 699
Score = 30.7 bits (66), Expect = 0.24
Identities = 21/98 (21%), Positives = 39/98 (39%)
Frame = -1
Query: 477 GIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPN 298
G + ++GR+ A + N+A +DP + L + G ++ A+ L +
Sbjct: 691 GEAYARSGRYVSALKAFNRASILDPDDWYVKYFIATLEKDMGEYEVAVSTLSEILAVRSK 750
Query: 297 HANARKYLGETLVALGRSYEDENQITEAQKAYEDCLAI 184
+ L ET V L + Y + A + E + I
Sbjct: 751 ELCVQVSLAETYVRLAKLYHARGFYSRAADSLEKSIQI 788
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -1
Query: 348 FKKAIEDFETSLKLNPNHANARKYLGETLVALGRSYEDENQITEAQKAYEDCLAI 184
++ AIE + +L + N+ NA V LG +Y Q++E+++AY D + I
Sbjct: 18 YELAIEQSKKALSFDANNYNAN-------VFLGVAYFSTKQLSESKEAYLDAIKI 65
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 34.3 bits (75), Expect = 0.019
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = -1
Query: 369 LYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALGRSYEDENQITEAQK 208
L N G+ KA E S+K NP H A K+LG LG + EA K
Sbjct: 303 LIKNGGSISKAAVLLEQSVKENPQHFEAWKWLGRIHTLLGNESRVVEALLEAVK 356
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.9 bits (74), Expect = 0.026
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = -1
Query: 474 IEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNH 295
+ H K+ + A +KA+ DP + R + K+A+ DF +L L P+
Sbjct: 47 LAHLKSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSD 106
Query: 294 ANARKYLGE 268
ARK L E
Sbjct: 107 PAARKKLRE 115
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 33.1 bits (72), Expect = 0.045
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 9/169 (5%)
Frame = -1
Query: 597 LPTCXAQISHIGEEDSLHRNTQMDYXQAQASKWAFRSVAE-----GIEHFKAGRHSEAFQ 433
+P + +G+E N Q+D +A A + VA+ G E F + R+ +A +
Sbjct: 28 VPFFMQSLEDVGDESE--NNVQLDALKALAYEGEPHEVAQNFREHGNECFASKRYKDAEE 85
Query: 432 CLNKALSIDPRNVEGLVA----RGALYANSGTFKKAIEDFETSLKLNPNHANARKYLGET 265
KAL+ + + +A R A +++ + D L+ + HA A +
Sbjct: 86 FYTKALAQKCGDKDIEIACYSNRAACNLLFENYRQVLNDCAQVLQRDSTHAKAYYRSAKA 145
Query: 264 LVALGRSYEDENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTASK 118
LVAL R E + I + + AI+ +E Q D + + + K
Sbjct: 146 LVALKRYDEAKECIRLCSLVHPNDPAILALSKELQKKSDDFEKRESEKK 194
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 31.9 bits (69), Expect = 0.10
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = -1
Query: 477 GIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPN 298
G ++K G +A C N++L I+P + G + A+E F L +NP
Sbjct: 528 GKYYYKKGDLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINPE 587
Query: 297 HANARKYLGETLV 259
+ L ++
Sbjct: 588 DGESWNNLASAML 600
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 31.9 bits (69), Expect = 0.10
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 474 IEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNH 295
+ H + +++ AL I+P + + + RG Y G A D+E SL+L+PN+
Sbjct: 49 LTHLRKKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELDPNN 108
Query: 294 ANARKYL 274
+K L
Sbjct: 109 TYIQKSL 115
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = -1
Query: 465 FKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANA 286
F +G +EA K++++D + + G + ++++ FE K PN +
Sbjct: 426 FVSGEFAEAISDYQKSIALDDSFIYSHIQLGVAQYKTHAIAESMKTFEDCKKRFPNSSEV 485
Query: 285 RKYLGETLV 259
Y GE L+
Sbjct: 486 YNYFGEILL 494
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.7 bits (66), Expect = 0.24
Identities = 25/129 (19%), Positives = 56/129 (43%)
Frame = -1
Query: 474 IEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNH 295
I+ F+ G++S++ + + L P++ + + G + A+ + ++P
Sbjct: 16 IDQFEKGQYSKSLKTIQSVLKKKPKHPDSVALLGLNLCKLHDSRSALLKCGYASSIDPKS 75
Query: 294 ANARKYLGETLVALGRSYEDENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTASKP 115
++ L + R +D N + K Y++ LAI P +E +L+++ +P
Sbjct: 76 ----QFCWHALAIVYRETKDYNN---SLKCYQNALAISPNNESLWYDAAYLQAQLGLYQP 128
Query: 114 LIEPAELLL 88
L + LL
Sbjct: 129 LFDNWNRLL 137
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 30.3 bits (65), Expect = 0.31
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Frame = -1
Query: 594 PTCXAQISHIGEEDSLH--RNTQMDYXQAQASKWAFRSVAEGIEHFKAGRHSEAFQCLNK 421
P A + GE++ L+ N +D +A W +A GI + + SEA + +K
Sbjct: 343 PLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW----LAVGIYYLCVNKISEARRYFSK 398
Query: 420 ALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALG 250
+ ++DP+ + +A G +AI + T+ +L +LG + LG
Sbjct: 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 29.5 bits (63), Expect = 0.55
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 474 IEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALY 364
+ H+K ++ E+ + LN LS DP + E L + LY
Sbjct: 86 LSHYKLKQYEESRRYLNMLLSKDPNSPEALKLKNRLY 122
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 420 ALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALGRSY 241
A SID E G Y+ +KA+ F+ +L+LN N+ +A +G V L ++
Sbjct: 330 ASSIDKFRPETCSIIGNYYSLLSEHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTH 389
Score = 23.0 bits (47), Expect(2) = 8.5
Identities = 15/66 (22%), Positives = 25/66 (37%)
Frame = -1
Query: 450 HSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLG 271
H +A +AL ++ + G Y AIE + ++ +N A LG
Sbjct: 354 HEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRKDYRAWYGLG 413
Query: 270 ETLVAL 253
+T L
Sbjct: 414 QTYEVL 419
Score = 20.6 bits (41), Expect(2) = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 258 ALGRSYEDENQITEAQKAYEDCL 190
ALG YE ++ EA K+Y+ L
Sbjct: 445 ALGNCYEKIDRPQEAIKSYKRAL 467
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 240 EDENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAELL 91
EDEN K EDC A + F + SL ++S T + L + +LL
Sbjct: 684 EDENHRVHHVKVSEDCTATVSF---GKQSLHIVRSSVTLLETLDDYGKLL 730
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 462 KAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKL 307
K+G++S+A + + ++ RN G + G L G KKA + + L++
Sbjct: 53 KSGQYSQAELDAKRMIHLNARNARGYLRLGKLLQLDGFDKKADQLYTQGLRM 104
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -1
Query: 246 SYEDENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAELLLPG 82
+Y+DEN + + D I E S+ F KSKT+ + I A + G
Sbjct: 889 NYDDENSLNRGGTSESDSEFIWDVDESNSGSIVFPKSKTSINLNNINSASASIMG 943
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 325 KIFYGLFECSTIGVQCSSSNKTLYISRIYAQSFIQALK 438
++ YGLFE I + C S + +Y+ + + LK
Sbjct: 262 RLAYGLFEAPEIQIICDPSLEMMYVESHLNHAVFEILK 299
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 204 YEDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAEL 94
+ED + E SLD LK+KT+ P++ EL
Sbjct: 445 WEDARYFSKENRELLRSLDSLKAKTSKKDPIVRRNEL 481
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 180 PFHEEAQNSLDFLKSKTTASKPLIEPAELLLPG 82
P+ E N+ D+L K +P P LL PG
Sbjct: 212 PWDEAISNTGDYLLYKKQCERPSYHPWNLLSPG 244
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/70 (21%), Positives = 26/70 (37%)
Frame = -1
Query: 450 HSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLG 271
H ++ Q K L P N L Y+ A++ L++NP ++ +L
Sbjct: 476 HQKSVQSYQKCLEKQPTNTNALFHLAMQYSERRAITDAMQIVRRLLEVNPKYSIVSWHLL 535
Query: 270 ETLVALGRSY 241
V+ Y
Sbjct: 536 VLCVSCSEQY 545
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 184 DS*AIFISFLCFCYLVLVFI 243
D+ A F S+LCF +V+VFI
Sbjct: 511 DAGAFFQSYLCFPVVVIVFI 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,323
Number of Sequences: 5004
Number of extensions: 49653
Number of successful extensions: 163
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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