Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_H16
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 38 0.009
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 33 0.26
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 33 0.35
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493... 32 0.46
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 31 1.4
01_05_0283 - 20354065-20354154,20354579-20354890,20355566-203557... 31 1.4
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 30 1.9
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 29 5.7
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 28 7.5
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 28 7.5
09_04_0281 - 16360082-16361059,16361608-16361688,16363287-163636... 28 9.9
02_04_0391 + 22576839-22577387 28 9.9
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 37.9 bits (84), Expect = 0.009
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +3
Query: 72 RIRHSPNRARIEIKPSNV-NNQFRQPACPSEREQIQARGAPALRQEPELALRRALVQVRV 248
++ P + ++ P + + Q +Q P + Q + P L+ +P+L + L Q
Sbjct: 175 QLHPQPQQQPSQLHPQQLLHPQSQQTPQPQPQVHPQPQQPPQLQPQPQLLQQPQLPQQLQ 234
Query: 249 PGHHLQQGRQQAPELLHPQVREPEHHQLEQLVPKQGLQVQLQPE 380
P L QQ P+L P+ Q QL P+ L Q QP+
Sbjct: 235 PQSQLPPQPQQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQ 278
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +3
Query: 204 EPELALRRALVQVRVPGHHLQQGRQQAPE-LLHPQVREPEHHQLEQLVPKQGLQVQLQPE 380
E + + + P QQ QQ P+ LHPQ ++P QL+ Q QL P+
Sbjct: 131 EARARMNNGAAKPKEPEPEAQQQTQQPPQPQLHPQPQQPLQPQLQLHPQPQQQPSQLHPQ 190
Query: 381 QTRYQLAHLLP 413
Q + + P
Sbjct: 191 QLLHPQSQQTP 201
>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
40479205-40480047,40480176-40480269,40480356-40481207,
40481367-40481437,40481750-40481821,40481977-40482019
Length = 1530
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +3
Query: 195 LRQEPELALRRALVQVRVPGHHLQQGRQQAPELLHPQVREPEHHQLEQLVPKQGLQVQLQ 374
LR + EL ++ Q++ H Q ++QA +LL Q ++ + Q +QL+ +Q LQ QLQ
Sbjct: 862 LRVQFELEQQQRRQQLQQEQHQRQLQQRQAQQLLQQQQQQQQQQQ-QQLILEQMLQQQLQ 920
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 32.7 bits (71), Expect = 0.35
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Frame = +3
Query: 201 QEPELALRRALVQVR--VPGHHLQQG--------RQQAPELLHPQVREPEHH---QLEQL 341
Q+P++ ++ L Q + V H + QG +QQ P + H Q+ + HH Q +QL
Sbjct: 504 QQPQVVVQAQLQQTQPSVQSHTVLQGGLQQIQLLQQQQPHVQHQQIPQQLHHQQQQTQQL 563
Query: 342 VPKQGLQVQLQP-EQTRYQLAHL 407
P Q +Q +Q +Q + Q H+
Sbjct: 564 QPVQQVQQSVQEHQQIKIQPVHV 586
>06_01_0675 +
4937309-4937354,4937606-4937718,4937810-4937905,
4938003-4938059,4938145-4938300,4938402-4938486,
4938727-4938817,4938896-4939060,4939150-4939345,
4939593-4939731,4940187-4941874,4942575-4942765,
4942850-4942994
Length = 1055
Score = 32.3 bits (70), Expect = 0.46
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 132 QFRQPACPSEREQIQARGAPALRQEPELALRRALVQVRVPGHHLQQGRQQAPELLHPQVR 311
Q P P+ R+ + Q+P L + Q L Q +QQ +L Q+
Sbjct: 589 QLGLPKSPTHRQGLTGLPIAGSLQQPTLTQTSQVQQAAEYQQALLQSQQQQQQLQLQQLS 648
Query: 312 EPE-HHQLEQLVPKQGLQVQLQPE 380
+PE QL Q + +Q + QL P+
Sbjct: 649 QPEVQLQLLQKIQQQNMLSQLNPQ 672
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 234 VQVRVPGHHLQQGRQQAPELLH-PQVREPEHHQ 329
VQ +P HH +QQ P+L H PQ + P Q
Sbjct: 403 VQPHIPQHHQVMAQQQQPQLQHLPQQQHPNAQQ 435
>01_05_0283 -
20354065-20354154,20354579-20354890,20355566-20355763,
20356371-20356754,20357445-20357858,20359771-20360022
Length = 549
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 135 FRQPACPSEREQIQARGAPALRQEPELALRRALVQVRVPGHHLQQGRQQ 281
FR P CPS +++ A+ + + L +++A Q R H L Q QQ
Sbjct: 466 FRHPKCPSVPKEVFAKARHHIHLKRRLNVKKAGQQARSRPHILGQSSQQ 514
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = +3
Query: 129 NQFRQPACPSEREQIQARGAPALRQEPELALRRALVQVRVPGHHLQQGRQQAPELLHPQV 308
NQ Q + Q+Q + L+Q+ + + +Q++ G LQQ + Q L Q+
Sbjct: 670 NQLHQQHQLQPQNQLQQQHQ--LQQQLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQM 727
Query: 309 REPEHHQLEQLVPKQGLQVQLQPEQTRYQ 395
++ + Q +Q + + Q Q+Q Q + Q
Sbjct: 728 QQMQQQQQQQQIQQMQQQQQMQQMQQQQQ 756
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Frame = +3
Query: 114 PSNVNNQFRQPACPSEREQIQARGAPALRQEPELALRRALVQVRVPGHH-LQQGRQQAPE 290
P++ + F QP+ S + G + + E + Q GH LQQ QQ+P
Sbjct: 70 PTSASGAFSQPSMQSNQ------GGQVSQSQQERPGQTVYPQASHLGHQQLQQPTQQSPF 123
Query: 291 LLHPQVREPEHHQLEQLVPKQGLQVQLQPEQTRYQLAH 404
Q + P H +Q Q+ QP +Y H
Sbjct: 124 QPTAQHQAPFQHSQRAPYQQQQQQMSQQPPAHQYPSTH 161
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 261 LQQGRQQAPELLHPQVREPEHHQ-LEQLVPKQGLQVQLQPEQTRYQLAHLLPGLKR 425
LQ + PE L PE+H L + ++++PE +RY + ++P L R
Sbjct: 3 LQPPAVEPPEWLRTLPVAPEYHPTLAEFADPIAYILRIEPEASRYGICKIVPPLPR 58
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 261 LQQGRQQAPELLHPQVREPEHHQLEQLVPKQGLQVQLQP--EQTR 389
L +G + P L PQ P+H Q +Q + +Q Q Q QP +QTR
Sbjct: 589 LPEGHKVVPSGLVPQA--PKHQQQQQPLQQQKQQPQSQPPLQQTR 631
>09_04_0281 -
16360082-16361059,16361608-16361688,16363287-16363650,
16363675-16364348
Length = 698
Score = 27.9 bits (59), Expect = 9.9
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = +3
Query: 138 RQPACPSEREQIQARGAPALRQEPELALRRALVQVRVPGHHLQQGRQQA--PELLHPQVR 311
RQ P + Q+ + + EP+ L A P Q GR Q P+L PQ
Sbjct: 492 RQHCSPQQPLQLGLQLQQLVEHEPQSGLHWAQEHEPQPLQP-QLGRPQPLQPQLGQPQPL 550
Query: 312 EPEHHQLEQLVPKQGLQVQLQPEQTRYQLAHL 407
P+ Q + L P+ G LQ + R Q+ L
Sbjct: 551 HPQLGQPQPLHPQLGQAQPLQLQLGRVQVQQL 582
>02_04_0391 + 22576839-22577387
Length = 182
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 102 IEIKPSNVNNQFRQPACPSEREQIQARGAPALRQEPELA 218
+EI+P+N Q QP E++Q+ L +EPE A
Sbjct: 53 VEIQPTNKLEQLIQPTNEHEQQQLLQPPPSVLVREPETA 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,730,431
Number of Sequences: 37544
Number of extensions: 162860
Number of successful extensions: 798
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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