Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_H16
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.82 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 195 LRQEPELALRRALVQVRVPGHHL-QQGRQQAPELLHPQVREPEHHQLEQLVPKQGLQVQL 371
           L++ P+L     L   ++    + +Q +Q   +  H Q ++   H +    P+Q  Q Q 
Sbjct: 389 LKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQ 448

Query: 372 QPEQTRYQ 395
           Q +Q + Q
Sbjct: 449 QQQQQQQQ 456


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 255 HHLQQGRQQAPELLHPQVREPEHHQLEQLVPKQGLQVQLQ 374
           HH Q    QA     PQ ++ +  Q  Q   +Q  Q Q Q
Sbjct: 815 HHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQ 854


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 777 PPXEGGTAPXQPPAEVLHQQKEHLQQYHL 691
           PP +  +     PA  +HQ ++ LQQ+ L
Sbjct: 55  PPSQNPSQMMISPASGIHQMQQLLQQHIL 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,996
Number of Sequences: 438
Number of extensions: 1632
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)