Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_H12
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    24   0.40 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    30   0.41 
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    30   0.41 
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    29   0.72 
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.9  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   3.9  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   6.7  

>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 24.2 bits (50), Expect(2) = 0.40
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 58  SLIVAH*NTIHNITKIHFNA 117
           SLI A  NTIH +T+ +F++
Sbjct: 260 SLIEARPNTIHGVTESYFSS 279



 Score = 24.2 bits (50), Expect(2) = 0.40
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 97  TKIHFNAYITASICNVCNLMFTDDGGSSWYCATVADP 207
           +K+H  +  T +IC +CNL   +D  +     TV  P
Sbjct: 296 SKLHVPS--TEAICTICNLPMQEDAETWLQKTTVEHP 330


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 418 RHYKNDEYDRYSSKKKDVYQEKHKSSRSSKDYDRQRYRD 302
           R Y N   DR  S  +   +E H+  RS   YDR  YRD
Sbjct: 327 RQYYNSNRDRKRSSSRSDDREYHR--RSDGRYDRSNYRD 363


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 427 SHDRHYKNDEYDRYSSKKKDVYQEKHKSSRSSKDY 323
           SHD  Y+ D Y R  S ++D  + +  +   SK Y
Sbjct: 283 SHDDEYRRDAYSRSPSPRRDREENRSPAYEGSKSY 317


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 501 NAEARAPAIPERSTKRREPEKINTNRTIDITKTTNMTDTVRKRRTFTKRNTSRP 340
           N  ARA        +++  EK+NTNRT+       + +  +  ++ T+R   RP
Sbjct: 298 NLRARASFSNFMENEKKLYEKVNTNRTLLRNANLTLNEAQQSVKSLTERQGPRP 351


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = -2

Query: 558 VALATRQKANPNRNARKNGNAEARAPAIPERSTKRREPEKINTNRTIDITKTTNMTDTVR 379
           + L  RQKA   R   +   A +R  A  +    +    K+N++ TI   +++N+  + +
Sbjct: 512 IMLEARQKAIERRRNEEEELARSRERARKKAEEIKISSSKMNSSPTITNERSSNVESSKK 571

Query: 378 KRRTFTKRNTS 346
               +TK   S
Sbjct: 572 VEAIYTKEPQS 582


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 424 HDRHYKNDEYDRYSSKKKDVYQEKHKSSRSSKDYDRQRYRD 302
           +D + ++  Y    S+ +  Y+E+   S  + DYD +  RD
Sbjct: 171 YDDYSRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLRD 211


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 652 HALLFLLDLSSKMGSNFLIRRLYLMIXVRPSYL 750
           H L+ L +L    GS  ++ RLYLMI V  +YL
Sbjct: 38  HNLMDLYELVQYAGS--IVPRLYLMITVGSAYL 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,343
Number of Sequences: 5004
Number of extensions: 39218
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)