Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_H09
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   108   4e-24
AC024751-6|AAK21506.1|  270|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  108 bits (260), Expect = 4e-24
 Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
 Frame = -3

Query: 771 KGKCATVVVSXRKDPXIIFNQDXGXTRXFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIW 592
           KGK        +  P +I+ QD    R FRNIPGV+           LAPGGHLGR +IW
Sbjct: 192 KGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIW 251

Query: 591 TQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR 415
           T+SAF +LD ++G+    S Q KK +++P P MAN+D +R+++S+E+ K +RAP K  + 
Sbjct: 252 TESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVL 311

Query: 414 ATRKLNPL 391
                NPL
Sbjct: 312 PKVHRNPL 319


>AC024751-6|AAK21506.1|  270|Caenorhabditis elegans Hypothetical
           protein Y18H1A.2 protein.
          Length = 270

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -2

Query: 349 PXLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRER 215
           P LKRK + E R+RK  +  +D+E+   K  K++   K +K R R
Sbjct: 148 PCLKRKELEEERKRK--REDSDSEEKAKKRHKKDKKKKKKKHRHR 190


>Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical
           protein T28B8.5 protein.
          Length = 527

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 392 SLTTKAMLKLNPYAAVXEEESYLRAAQKEELEGSC*C 282
           S TTK  LK   Y      E+  R+  +E++  SC C
Sbjct: 272 SCTTKTKLKTTHYTGTYTVEACFRSCMQEKIIASCGC 308


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 609  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 430
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 429  KRVI 418
            K  +
Sbjct: 2849 KEFV 2852


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 609  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 430
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 429  KRVI 418
            K  +
Sbjct: 2849 KEFV 2852


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,659,417
Number of Sequences: 27780
Number of extensions: 221964
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)