Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_H08
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    32   0.12 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    31   0.20 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    29   0.62 
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    29   0.62 
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.9  
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    27   2.5  
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    27   3.3  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    26   7.6  

>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 1   FFFFFFHIPSGYGMNSPPRCFPNAMTCPSSNEAC---GEY*AEVHGRR*PLSI 150
           FF++ F +  G G+NSP   + +AM   + N  C   G Y  E  GRR PL I
Sbjct: 288 FFYYGFSVMQGAGINSP---YLSAMILDAVNFGCTFGGMYVLERFGRRNPLII 337


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -1

Query: 564 LKFTLAKDVLSSVAI*FIEEVVGPKE----ERKASKYIRESVKVTPVINKLKSGR 412
           L+  + KD+LS++ +  IE +V P+E    E    + +RE VK T  I   KS R
Sbjct: 405 LRKHIYKDILSTLRLVMIENMVKPEEVLIVENDEGEIVREFVKETDTITLYKSMR 459


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 1   FFFFFFHIPSGYGMNSPPRCFPNAMTCPSSNEAC---GEY*AEVHGRR*PLSI 150
           +F++ F +  G GMNSP   + +A+   + N  C   G +  E  GRR PL I
Sbjct: 284 YFYYGFEVFEGTGMNSP---YLSALILDAVNFGCTFGGLFVLEFFGRRMPLII 333


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 1   FFFFFFHIPSGYGMNSPPRCFPNAMTCPSSNEAC---GEY*AEVHGRR*PLSI 150
           +F++ F +  G GMNSP   + +A+   + N  C   G +  E  GRR PL I
Sbjct: 284 YFYYGFEVFEGTGMNSP---YLSALILDAVNFGCTFGGLFVLEFFGRRMPLII 333


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 431 LITGVTFTLSLIYFDAFLSSFGPTTSSINQIATLDNTSLANVN 559
           +I GVT +   +  DA  S    T SSIN + +  N+  +NVN
Sbjct: 155 VIMGVTKSSKNLVEDAHKSKKASTNSSINNMVSTVNSENSNVN 197


>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 495 PKEERKASKYIRESVKVTPVINKLKSGRLAWYGHVM 388
           P E R+  KY+ ++ +V PVIN L+SG    YG V+
Sbjct: 83  PNETRE--KYLGKNTEVAPVINVLQSG----YGKVL 112


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 495 PKEERKASKYIRESVKVTPVINKLKSGRLAWYGHVM 388
           P E R   KY+ ++ +V PVIN L+SG    YG V+
Sbjct: 83  PNEAR--DKYLGKNTEVAPVINVLQSG----YGKVL 112


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +1

Query: 220 GSAQLIFLFHSLLSAVISTLTPLSL----ISTFTNSIHVYFDRPLPPLACTTISIHLLST 387
           GS  L+ L + LL  V    T +S+    I ++  S+ +  DRP+P      IS+HL+ T
Sbjct: 11  GSLTLVKLKNILLYIVCPLETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPT 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,951
Number of Sequences: 5004
Number of extensions: 53628
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)