Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_H07
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    28   1.8  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    26   7.3  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.6  

>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 528 ISLSLVTGCTNVRHKLSSAY--VTNNP*NMPSFLXLSSHRVIK*DSHXXY*TAV 683
           I++SL+ GC N++ KLS+ Y  + + P +    L L S    K D H  Y  A+
Sbjct: 253 ITISLLIGCRNLKSKLSAKYPRIVSIP-DAVIILLLGSFLSKKFDWHSNYGIAI 305


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/58 (22%), Positives = 24/58 (41%)
 Frame = -3

Query: 691 SKSTAVQYXXCESYFMTRCDESXRNDGIFYGLLVTYALDNLCRTFVQPVTREREIERV 518
           +KS  +    CE  +  +       DG ++G    + L  +      P ++ER I R+
Sbjct: 134 TKSVKLYCPRCEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQERYIPRI 191


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 179 LV*KKIITKIQLSIFLTGSYLNLFLVMVII*KEVQN 286
           ++ KK++T   L + + GS +NL  V  ++ K+V N
Sbjct: 340 MIYKKVLTSKTLFVAVDGSKINLDYVYNLLAKDVDN 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,988
Number of Sequences: 5004
Number of extensions: 40694
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)