Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_H05
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0019 - 8049145-8049334,8059808-8060618,8060708-8060783,806... 30 2.4
01_01_0080 - 619935-620462 29 4.3
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90... 28 7.4
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 28 7.4
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 28 7.4
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052... 28 7.4
04_04_1290 + 32399905-32399972,32400502-32400571,32400950-324017... 28 9.8
03_02_0816 + 11487811-11488708,11488835-11489235 28 9.8
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089... 28 9.8
>10_05_0019 -
8049145-8049334,8059808-8060618,8060708-8060783,
8060856-8061008
Length = 409
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 653 KRPKWSAPQG-GADPAPASHRTRGEVL*PPKRDSLPKGSDA 534
K P W+ P D P+ RTRG+V P++ +P SD+
Sbjct: 118 KLPPWANPHKVDDDVGPSRKRTRGQVKLAPRKRRVPATSDS 158
>01_01_0080 - 619935-620462
Length = 175
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 670 SXPSEEKGRSGVLLKEEQTLRQRHTELGEKCSDLQ 566
S +E G G+ ++EE+ L ++ +G+KC LQ
Sbjct: 107 SDDDDEAGGGGLAVEEEEALWRKTIMMGDKCRPLQ 141
>12_01_0119 +
905916-907277,907737-907774,908269-908492,909411-909637,
909733-909980,910275-910557,910707-911135
Length = 936
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 346 LSEQIRCHIIEQHKLRHHQRDTNNTL 269
L EQ+R I++ K +HH +D++N+L
Sbjct: 714 LDEQVRLLILDVAKEQHHYQDSHNSL 739
>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 346 LSEQIRCHIIEQHKLRHHQRDTNNTL 269
L EQ+R I++ K +HH +D++N+L
Sbjct: 1256 LDEQVRLLILDVAKEQHHYQDSHNSL 1281
>09_01_0076 +
1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -1
Query: 646 RSGVLLKEEQTLRQRHTELGEKCSDLQREIRYLK 545
R GV+L + Q LR+R + L +K DL RE+ L+
Sbjct: 402 RGGVVLDDVQGLRERISMLEQKNEDLCRELYDLR 435
>07_03_1731 -
29102403-29102720,29103529-29103735,29103937-29105210,
29105298-29105734,29106370-29106764,29106921-29107051,
29109034-29109052
Length = 926
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 625 EEQTLRQRHTELGEKCSDLQREIRYLKA 542
EE+ LR R EL E+ QRE+ +L+A
Sbjct: 452 EEERLRDRVRELAEQNVSFQREVTFLEA 479
>04_04_1290 +
32399905-32399972,32400502-32400571,32400950-32401734,
32403068-32403674
Length = 509
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -1
Query: 613 LRQRHTELGEKCSDLQREIRYL---KALMRDLFKAKGL 509
+RQR EL E+CS ++ EI + K + LF+ GL
Sbjct: 440 IRQRVVELEEECSSMREEIHRIGKPKGALSRLFRKLGL 477
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 572 PPKRDSLPKGSDA*SFQGEGSNQVNQSTTPPPEK 471
PP ++ KGSD ++ +GS V+ S +P P+K
Sbjct: 206 PPTPEATGKGSDN-RWKDDGSRDVDPSPSPTPQK 238
>02_05_0886 +
32507324-32507938,32508103-32508252,32508498-32508935,
32509038-32509151,32509256-32509852
Length = 637
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -3
Query: 653 KRPKWSAPQGGADPAPAS-HRTRGEVL*PPKRDSLPKGSDA*SFQG-EGSNQVNQSTT 486
KRP WSA G PAPA+ G V+ P + S + +F G +G + +S++
Sbjct: 568 KRPFWSAGGDGDKPAPAALAENVGAVMSDPNKFSAAIAAAINNFMGKDGESSSGKSSS 625
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,704
Number of Sequences: 37544
Number of extensions: 297521
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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