Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_H04
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 28 1.7
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 2.9
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 27 2.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.1
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 26 5.1
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 26 6.8
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.0
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 9.0
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 9.0
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 487 DFTSLFVSLSSIFTSVTISSGSVSCLSR 570
DFT+LF SL+ F SV+ ++ LSR
Sbjct: 2 DFTALFASLNPTFASVSHCGNWIASLSR 29
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -3
Query: 623 DIMLSDYPHKYEEYRAYQRERQLTEPEEIVTEVKMEDKLTKSDV-KSEKSSDHKPEGPKI 447
D SDY + + + + E Q T PE++ +V + ++ +D K S+ KP+ +
Sbjct: 52 DQSASDYAYALKLQQLFDSENQATAPEKLPKDVIIPEEEYHTDTFNVVKESNDKPKENLV 111
Query: 446 DPEKLR 429
E+ +
Sbjct: 112 TSEECK 117
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = -3
Query: 722 IVGDEKDYVLAKRLATEAL-CDLGITAVDASEVLDIMLSDYPH--KYEEYRAYQRERQ-- 558
I+ D+ + ++ +A E + D T DA + + LS+ +YEEYR Q+E Q
Sbjct: 412 IIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEE 471
Query: 557 LTEPEEI 537
L P+E+
Sbjct: 472 LEFPDEV 478
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 586 SSYLCG*SDSMISKTSLASTAVIPKSHRASVANLFAKT*SFSSPTMDL 729
SS + S S + TSL+S++VIP S + +++ A S SS + L
Sbjct: 19 SSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 722 IVGDEKDYVLAKRLATEALCDLGIT--AVDASEVLDIMLSDYPHKYEEYRAYQRERQLTE 549
+V K KR A AL + ++ A+ +E L ++ + EEY + ER+L +
Sbjct: 264 LVSSSKSKSKTKRKARTALSSVSMSSSALFRNEGLTLLDDRFDKVEEEYTPIKDERELID 323
Query: 548 PEE 540
P++
Sbjct: 324 PDQ 326
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 499 LFVSLSSIFTSVTISSGSVSCLSRWYARYSSYL 597
LFVSL + + S S+ CL + + YL
Sbjct: 280 LFVSLPELIDRTNMDSQSIECLLNYIEEFLKYL 312
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 505 VSLSSIFTSVTISSGSVSCLSRWYARYSS 591
VSL F ++T+ S CL+ W +SS
Sbjct: 358 VSLIESFNNITMESVLTECLNDWSTTWSS 386
>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 43
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 495 ITFCQFIFHLHFSYYLFWFSELSFPLVCTIFL 590
I F FI H+HFS++ + PLVC I L
Sbjct: 10 IFFRLFIIHIHFSHHC-CENHFINPLVCLIAL 40
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 9.0
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = -3
Query: 683 LATEALCDLGITAVDASEVLDIMLSDYPHKYEEYRAYQRERQLTEPEEIVTEVKMEDKLT 504
L EA + +T EVLD + E RA +RE+ E + K +++
Sbjct: 397 LVDEAAAAVRVTRESQPEVLDNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQVE 456
Query: 503 KSDVK-SEKSSDHKPEGPKIDPEKLRQD 423
+ EK K G ++ K R D
Sbjct: 457 EETRPIREKYELEKSRGSELQDAKRRLD 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,509
Number of Sequences: 5004
Number of extensions: 40931
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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