Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_H04
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0028 - 19393700-19393899,19394058-19394116,19394437-193945... 31 1.0
11_02_0015 - 7355989-7357092 31 1.0
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 30 1.8
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 30 2.3
04_01_0003 + 79564-79698,79879-79956,81025-81388,82399-82437,825... 30 2.3
10_08_0483 + 18230383-18230874 29 4.1
01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917... 28 7.1
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 28 7.1
04_04_1545 - 34278266-34278586,34278685-34279114,34279225-342793... 28 9.4
>11_06_0028 -
19393700-19393899,19394058-19394116,19394437-19394521,
19395305-19395474,19397534-19397613,19398288-19398392,
19399268-19399308,19399400-19399438,19400473-19400818,
19401762-19401815,19402249-19402350
Length = 426
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -3
Query: 659 LGITAVDASEVLDIMLSDYPHKYEEYRAYQRERQLTEPEEIVTEVKME-DKLTKSDVKSE 483
L + + +L++ + + + ++E+ R +LT+ E I + ++E ++ VKS
Sbjct: 99 LSALLIQVNSLLNMFIFN-EYSWDEWVTNDRLLKLTD-ENIRKQQELEKSQVVDKSVKSG 156
Query: 482 KSSDHKPEGPKIDPEKLRQD 423
+S+ HKP+G D + ++D
Sbjct: 157 RSAQHKPKGSNADAKTDKED 176
>11_02_0015 - 7355989-7357092
Length = 367
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 134 PSCTPGTRSPAVPPVLCSVG 193
PS PG SPA PPVL ++G
Sbjct: 277 PSAAPGVDSPAFPPVLLAIG 296
>06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +1
Query: 100 VSEAEPDSGSDSELHSGDTLAGGAASTVFSGK 195
V EA DSGS E+ S DTL G AA K
Sbjct: 1253 VYEASKDSGSMPEMQSSDTLEGDAADGTLERK 1284
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/62 (22%), Positives = 32/62 (51%)
Frame = -3
Query: 635 SEVLDIMLSDYPHKYEEYRAYQRERQLTEPEEIVTEVKMEDKLTKSDVKSEKSSDHKPEG 456
++ ++ +L H+Y+ Y Q +RQ EP + V + +M+ ++ ++ +S +
Sbjct: 102 TQTVEELLQQMRHRYQIYLMQQMQRQCQEPRQ-VHQPQMQVQVPARNLNQSQSQEFPISA 160
Query: 455 PK 450
PK
Sbjct: 161 PK 162
>04_01_0003 +
79564-79698,79879-79956,81025-81388,82399-82437,
82561-82601,83258-83362,83914-83919,84044-84123,
86744-86913,87664-87748,88067-88125,88451-88464
Length = 391
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -3
Query: 599 HKYEEYRAYQRERQLTEPEEIVTEVKME-DKLTKSDVKSEKSSDHKPEGPKIDPEKLRQD 423
+ ++E+ R +LT+ E I + ++E + VKS +S+ HKP+G D + ++D
Sbjct: 143 YSWDEWVTNDRLLKLTD-ENIRKQQELEKSQAVDKSVKSGRSAQHKPKGSNADAKTDKED 201
>10_08_0483 + 18230383-18230874
Length = 163
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = -3
Query: 608 DYPHKYEEYRAYQRERQLTEPEEIVTEVKMEDKLTKSDVKSEKSSDHKPEGPKIDPEKLR 429
D+P + R +R + +P+E+ E+ + D L K + + E+ K + K+ KL
Sbjct: 23 DHPRRRRRRRRRRRHKHKHKPDEVKEEM-VVDALPKEEEEEERGKRRKKKRKKLVTVKLS 81
Query: 428 QDM 420
++
Sbjct: 82 DEL 84
>01_05_0749 +
24890944-24891146,24891414-24891535,24891633-24891721,
24891813-24891848,24892268-24892367,24892524-24892566,
24892645-24892739,24892978-24893036,24893114-24893613,
24893691-24893772,24893864-24894429,24894520-24894655,
24894750-24894812,24894942-24895172,24895282-24895395
Length = 812
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -3
Query: 638 ASEVLDIMLSDYPHKYEEYRAYQRERQLTEPEEIVTEVKMEDK-LTKSDVKSEKSSDHKP 462
+S++ +I ++ H E Q+E+ + +E E K E K TK KSSD K
Sbjct: 673 SSDLKNICVTAAYHPVREL--LQKEKNKVK-KETAPETKQEPKEKTKIQENGTKSSDSKT 729
Query: 461 EGPKIDPEKLRQD 423
E K+D ++ ++D
Sbjct: 730 EKDKLDNKEGKKD 742
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 23 PLDCCVSLYSLFCA*LVACVSQSAHWCQRPSPTPVRTPSCTPGTRSPAVP 172
PL C+ + C+ VA + Q WC+ P T R + + AVP
Sbjct: 63 PLYQCMRRGHITCSTCVAEMGQECQWCRAPEATTTRCRAMEHFLAALAVP 112
>04_04_1545 -
34278266-34278586,34278685-34279114,34279225-34279322,
34279415-34279517,34279609-34279694,34279778-34279865,
34279950-34280063,34280147-34280235,34280369-34280484,
34280906-34280951
Length = 496
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -3
Query: 605 YPHKYEEYRAYQRE-RQLTEPEEIVTEV-KMEDKLTKSDVKSEKSSDHKPEGPKI 447
Y H E Y + ++ RQ+ P+EIVT+V + +K+ K VK ++H+ + P I
Sbjct: 116 YDHDLESYALFDKDGRQV--PQEIVTKVGETFEKILKETVKVR--AEHEDDMPLI 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,055,877
Number of Sequences: 37544
Number of extensions: 285579
Number of successful extensions: 1243
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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