Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_H03
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L19120-1|AAA28155.1|  815|Caenorhabditis elegans kinesin heavy c...    63   2e-10
L07144-3|AAK21446.1|  815|Caenorhabditis elegans Uncoordinated p...    63   2e-10
AB017163-1|BAA32594.1|  815|Caenorhabditis elegans kinesin Heavy...    63   2e-10

>L19120-1|AAA28155.1|  815|Caenorhabditis elegans kinesin heavy
           chain protein.
          Length = 815

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 30/61 (49%), Positives = 42/61 (68%)
 Frame = -2

Query: 563 KHKISXMEHXLEQLTKVHKQLVRDYADXRXEVPKXEXRXRATMVXVKALETAIKEAMRSV 384
           K +I  +E+ L++LTKVHKQLVRD AD R E+PK E R R     +K LETA++++ +  
Sbjct: 698 KQRIQFLENNLDKLTKVHKQLVRDNADLRVELPKMEARLRGREDRIKILETALRDSKQRS 757

Query: 383 Q 381
           Q
Sbjct: 758 Q 758


>L07144-3|AAK21446.1|  815|Caenorhabditis elegans Uncoordinated
           protein 116 protein.
          Length = 815

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 30/61 (49%), Positives = 42/61 (68%)
 Frame = -2

Query: 563 KHKISXMEHXLEQLTKVHKQLVRDYADXRXEVPKXEXRXRATMVXVKALETAIKEAMRSV 384
           K +I  +E+ L++LTKVHKQLVRD AD R E+PK E R R     +K LETA++++ +  
Sbjct: 698 KQRIQFLENNLDKLTKVHKQLVRDNADLRVELPKMEARLRGREDRIKILETALRDSKQRS 757

Query: 383 Q 381
           Q
Sbjct: 758 Q 758


>AB017163-1|BAA32594.1|  815|Caenorhabditis elegans kinesin Heavy
           chain protein.
          Length = 815

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 30/61 (49%), Positives = 42/61 (68%)
 Frame = -2

Query: 563 KHKISXMEHXLEQLTKVHKQLVRDYADXRXEVPKXEXRXRATMVXVKALETAIKEAMRSV 384
           K +I  +E+ L++LTKVHKQLVRD AD R E+PK E R R     +K LETA++++ +  
Sbjct: 698 KQRIQFLENNLDKLTKVHKQLVRDNADLRVELPKMEARLRGREDRIKILETALRDSKQRS 757

Query: 383 Q 381
           Q
Sbjct: 758 Q 758


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,670,146
Number of Sequences: 27780
Number of extensions: 118831
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)