Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_H02
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 219 5e-58
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 134 2e-32
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 129 5e-31
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 107 1e-24
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 102 6e-23
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 91 1e-19
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 27 2.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 5.0
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 8.7
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 219 bits (534), Expect = 5e-58
Identities = 98/169 (57%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
Frame = -1
Query: 646 NEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQ 467
N ARK ADE + +F H DGDHLTLLNVYHA+K WC+++F+++R+L S DNVR+Q
Sbjct: 541 NSARKLADEMRQQFTHPDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADNVRKQ 600
Query: 466 LSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG-SYLTVKDNQVVQLH 290
L R M+R ++ ST F K+YY+NIR+ALV+GFFMQVA G +Y+T+KDNQVV LH
Sbjct: 601 LRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLH 660
Query: 289 PSTCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNF 143
PS L P+WV+YNEFVLTTK++IR VT I+PEWL+++AP YY+L +F
Sbjct: 661 PSCGLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDDF 709
Score = 29.9 bits (64), Expect = 0.40
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -3
Query: 701 EIXSITAMLSVPQCFVRP 648
E+ S+TA+LSVP FVRP
Sbjct: 523 EVLSLTALLSVPNVFVRP 540
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 134 bits (323), Expect = 2e-32
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Frame = -1
Query: 628 ADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMD 449
AD+A+ F GDHLTLL++++ + +W +NF+ Y+SL +VR QL+ + +
Sbjct: 883 ADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRDQLANLCE 942
Query: 448 RFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG-SYLTVKDNQVVQLHPSTCL- 275
R ++ + S D I+KA+ G+F A L+R+G SY TVK NQ V +HPS+ +
Sbjct: 943 RVEIELVTNSSESLD---PIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVA 999
Query: 274 DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQ 137
+ KP +IY E VLTTK Y R +T+I+PEWLL+I+P Y++ N +
Sbjct: 1000 EKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHYFKPENIEE 1045
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 129 bits (311), Expect = 5e-31
Identities = 64/171 (37%), Positives = 104/171 (60%), Gaps = 2/171 (1%)
Frame = -1
Query: 643 EARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQL 464
E ++ AD + +FA+ + DHLTLLNVY +K N +WCY+++I R ++ ++VR+QL
Sbjct: 969 EKQQEADRQRAQFANPESDHLTLLNVYTTWKMNRCSDNWCYEHYIQARGMRRAEDVRKQL 1028
Query: 463 SRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLE-RTGSYLTVKDNQVVQLHP 287
R+MDR+ S + I +AL +G+F VA + G Y T+ +N V +HP
Sbjct: 1029 IRLMDRYRHPVVSCGRKRE----LILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHP 1084
Query: 286 STCLDHK-PDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQ 137
S L K +WVIY+E + T+K Y+ TV+ + P+WL+++AP +++ N Q
Sbjct: 1085 SGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQ 1135
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 107 bits (258), Expect = 1e-24
Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 5/166 (3%)
Frame = -1
Query: 643 EARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPH--WCYDNFINYRSLKSGDNVRQ 470
E R A EA+++F H +GD LT LN + ++ D WC NFIN R+LK+ ++R+
Sbjct: 553 EKRDEAIEARLKFLHSEGDLLTCLNALRQYLESSHDSRKQWCSQNFINRRALKTILDIRK 612
Query: 469 QLSR--IMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQ 296
QL + D + L +S E S+ N+ + ++G+ A L GSY T+ NQ +
Sbjct: 613 QLREHCLKDGWELN-SSPEVNSE----NLLLSFLSGYITNTALLHPDGSYRTIIGNQTIS 667
Query: 295 LHPSTCL-DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQY 161
+HPS+ L K + ++Y+E V TTK+Y+R V+ I+ WL +AP Y
Sbjct: 668 IHPSSSLFGKKVEAIMYHELVFTTKSYVRGVSSIRSNWLNAVAPHY 713
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 102 bits (244), Expect = 6e-23
Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 3/167 (1%)
Frame = -1
Query: 643 EARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQL 464
E + +D A+ +F + DHL LLN+Y +++N WC +F++ ++LK ++RQQL
Sbjct: 949 ERAEESDAAREKFNVPESDHLMLLNIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQL 1008
Query: 463 SRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPS 284
IM + ++ S E S D+ I +R+ L + +F Q A + G Y+ ++ LH +
Sbjct: 1009 VEIMSK---QKISLESVS-DWDI-VRRVLCSAYFHQAACAKGIGEYVHLRSGMPCHLHVT 1063
Query: 283 TC---LDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYEL 152
+ L + PD+VIY+E VLT+K Y+ VT + P WL + YY +
Sbjct: 1064 SSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVYYSV 1110
Score = 30.7 bits (66), Expect = 0.23
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3
Query: 701 EIXSITAMLSVPQCFVRPKRGAE 633
EI +I +MLSVP F RPK AE
Sbjct: 930 EIITIVSMLSVPSVFYRPKERAE 952
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 91.5 bits (217), Expect = 1e-19
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 1/158 (0%)
Frame = -1
Query: 646 NEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQ 467
+ ++ A A F +GD +T LNV+ +F N +D WC N++NY++L+ ++R
Sbjct: 486 SSSKNDAFVAHSSFFANEGDIITALNVFESFVGNKKDLQWCRKNYLNYQTLRQALDIRTH 545
Query: 466 LSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHP 287
L R +++F++ T+ S D I K L++GF VAHL+ GSY T+ QV
Sbjct: 546 LVRFLNKFSIP-TAQRLPSSD-CSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWLDSS 603
Query: 286 STCLDHKPDWVIYNEFVLT-TKNYIRTVTDIKPEWLLK 176
S + K W++Y+ V + T+ +++ ++ I+ WL K
Sbjct: 604 SVLHEKKTPWIMYSSAVESETQIFVKNISKIESFWLDK 641
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 521 IAPVGILHVLFEGVVYVQ*RKMVTVDVGKTHFSLVGS 631
I P GI H+L EG+ Y Q ++ +D+ F+ +GS
Sbjct: 199 IRPEGIEHLLLEGLAYCQ--ELKVLDLQDNTFTHLGS 233
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 415 TSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQL 293
T D Y+ + AL+N Q+ + + LT+ +V+QL
Sbjct: 832 TQTDEYLRRKDALINNLQNQLESTKEVANELTITKERVLQL 872
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 562 HAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFN 440
HA ++ E +F YRSL G V++ SR+ R N
Sbjct: 2057 HALQEERERVKSLETDFDKYRSLLEGQRVKRSESRLSMRSN 2097
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 490 SGDNVRQQLSRIMDRFNLKRTSTEFT-SKDYYINIRKALVNGFFMQVAHLERTGSYL 323
S ++ LS ++ L ST D I + + N + +++AH +RT S+L
Sbjct: 29 SSKTCQETLSSLLRELQLSHFSTAVRPGSDTSIFVFVKVQNDYLIELAHNDRTSSFL 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,087
Number of Sequences: 5004
Number of extensions: 50084
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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