Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_H01
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686...    29   4.2  
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574...    29   5.5  
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518     28   9.7  
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    28   9.7  

>08_02_0592 +
           19064025-19066596,19067036-19067084,19068530-19068605,
           19068767-19068922
          Length = 950

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -3

Query: 437 P*PHRREPDVALHY*EQATSVYLGRGYDHVPQGSARQKWPNPRPVLEA 294
           P P RR PDVA  +  + TS   GRG      G A  +     PV  A
Sbjct: 28  PPPRRRRPDVAAGWRGEGTSRVRGRGEKGTTHGGAEGEGAVVAPVRTA 75


>08_02_1236 +
           25454371-25456801,25456891-25457177,25457258-25457416,
           25457561-25457740,25457823-25458017,25459059-25459157,
           25459508-25460137,25460250-25460591
          Length = 1440

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 290 VMPQELVEGWAISA--ERILGEHDH 358
           V+ +E V+GW +    +RI GEHDH
Sbjct: 191 VLVEEGVDGWELEGVDDRIAGEHDH 215


>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
          Length = 783

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 190 DTSSRNCQRIFDKTNMYLIGLSVHRILIMSLEC 92
           D ++  CQ + ++    + GLSV  +++M+L C
Sbjct: 374 DGTNYGCQTVLNQVERVIAGLSVSAVVLMALIC 406


>01_01_0328 -
           2664412-2664535,2665388-2665465,2667784-2667895,
           2668344-2668410,2668473-2668562,2668672-2668787,
           2668999-2671924
          Length = 1170

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 362 GYDHVPQGSAR-QKWPNPRPVLEA*PTHKMRDLYALPH 252
           G DHVP+G A+ QK  N + V E+    ++ +L  LP+
Sbjct: 637 GIDHVPKGIAKFQKLYNLKGVFESASGFRLDELQCLPN 674


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,740,028
Number of Sequences: 37544
Number of extensions: 388634
Number of successful extensions: 846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)