Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G24
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical ...    51   8e-07
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    29   5.0  
AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine re...    28   6.6  
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    28   8.7  
AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical
           protein C01B10.8 protein.
          Length = 656

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
 Frame = -3

Query: 683 GSLCMFLRRCREDLNVTAVELTPAMLEVATQHFXXXXXXXXXXXXXXXXDFLAEEAVSG- 507
           G L  +L R  +  +VTAVEL P +L++A  HF                    +E     
Sbjct: 468 GLLTAYLVRHFKKAHVTAVELDPEVLKIANSHFSFPHSDARIDVVIQDALIHLQETAKKP 527

Query: 506 --HKYGAVLFDMDSKDRTLGLSSPPKQFLEDKVLEEVHSILDDDGHFILNLVCRDVELQA 333
              KY  +  D+ S  +   L  PP  FL  + L  + + + + G   LNLV RD E   
Sbjct: 528 EEEKYDVIFVDV-SGSQNAALQCPPSAFLTPEALGNMKNSVKEQGMISLNLVTRDSEFGK 586

Query: 332 SMLLTLKRHFKHLVSV 285
           S+   +  +F  L +V
Sbjct: 587 SIKKNIAEYFPTLYTV 602


>AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical
           protein Y34B4A.7 protein.
          Length = 369

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
 Frame = -3

Query: 683 GSLCMFLRRCREDLNVTAVELTPAMLEVATQHFXXXXXXXXXXXXXXXXDFLAEEAVSGH 504
           GSL MFL +    LN+T VEL P ++ +A + F                 F+ E   +G 
Sbjct: 187 GSLDMFLHQLNPKLNITVVELDPVVVGIARKWFNVVNDNTRRTITADGLKFIKEAKKNGE 246

Query: 503 KYGAVLFDMDSKDRTLGLSSPPKQFLEDKVLEEVHSILDDDGHFILNLVCRDVELQASML 324
            Y  V   +D+ D +  +  P K F   +    + SIL   G  I+N++ ++ +    + 
Sbjct: 247 LYEVVF--LDACDNSKIIPCPSKIFRNPETFSTLSSILSSTGALIVNILPQNDDTAGVIQ 304

Query: 323 LT--LKRHFKHLVSVKL 279
           +   L +HF   + V +
Sbjct: 305 IVEDLSQHFGSCIKVSI 321


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -3

Query: 527 AEEAVSGHKYGAVLFDMDSKDRTLGLSSPPKQFLEDKVLEEVHSILDD 384
           AEE ++   +  ++F ++  D+ L   S  KQF+   VLE + +I D+
Sbjct: 23  AEEQMTEKDFTNLVFTVEKFDQILKAYSEYKQFMPSYVLEPLDNITDE 70


>AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine
           receptor, class r protein8 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 547 LTKTRSLSSSFKSKCCVATSSIAGVSSTAVTL 642
           L K   L  S KSKCC   + + GV    VTL
Sbjct: 67  LVKASLLDCSTKSKCCSVFTCLLGVVMVVVTL 98


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 478 MSNSTAPYLCPETASSAKKSNPSLTKTRSLSSSFKS 585
           ++NST+  + P+TA S K     L K++ L+   KS
Sbjct: 291 LNNSTSTSVIPDTAVSRKPKGKGLKKSKKLNQKPKS 326


>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 185 EFNDLTA-VSRASFSXRLSAVCSENYFVHFLXTVS 286
           EF  L   V   ++  RL A CS N+FV+F+ T S
Sbjct: 255 EFESLPQEVQTITYLVRLFAFCSLNFFVYFVETKS 289


>AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical
           protein Y45F10D.7 protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/78 (26%), Positives = 30/78 (38%)
 Frame = +1

Query: 442 GDERPSVRSLLSMSNSTAPYLCPETASSAKKSNPSLTKTRSLSSSFKSKCCVATSSIAGV 621
           GD  PS+RS      S    LCP   +   + N    +   +S     K     SS   V
Sbjct: 20  GDVAPSIRSTFVAKKSALSVLCP-IDNVIMQYNGKKLRAIGMSEPLSDKVSAVASSSTSV 78

Query: 622 SSTAVTLRSSLHLLRNIQ 675
            +   T  +SL   R+I+
Sbjct: 79  FAAHGTNITSLAFCRDIK 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,261
Number of Sequences: 27780
Number of extensions: 297363
Number of successful extensions: 904
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)