Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G18
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...    97   1e-20
04_01_0387 - 5116673-5117968                                           31   1.3  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    30   2.3  
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    29   5.4  
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406...    28   7.2  
02_01_0347 - 2493570-2493572,2493626-2493853                           28   7.2  
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413...    28   9.5  
01_01_0016 - 88825-90411                                               28   9.5  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/81 (54%), Positives = 62/81 (76%)
 Frame = -1

Query: 320 CQRTKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSK 141
           C + KAIK+F +RNIVE AA+RD+ +A V+  + LPKLYAK+H+CVSCAIH+ +VR RS+
Sbjct: 30  CPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSR 89

Query: 140 KDRRIRTPPKSNFPRDMSRPQ 78
           ++RR R PP+  F R +  P+
Sbjct: 90  ENRRDRRPPE-RFRRRVPDPR 109



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 26/34 (76%), Positives = 30/34 (88%)
 Frame = -3

Query: 408 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDQ 307
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKD+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDK 34


>04_01_0387 - 5116673-5117968
          Length = 431

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 462 LAKVLFRRSLFTGSEVRNMTRKRRN--GGRAKHGRGHVKAVRCTNCARCVPKDQGHQKV 292
           LA VLF  S F  +  RN+  +  +  GGRA     H +     +C  C+P+D G   V
Sbjct: 352 LAGVLFGYSAFYVASWRNIGFEAPDFGGGRAARVMCHFEPTGVPSCVACLPRDGGGASV 410


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 258 DRRRFYDVPNHELFDGLGPL-ARTARSLCISRL 353
           DR  FYD PN+E FD  G + +++ +SL +  +
Sbjct: 354 DRTLFYDEPNYEAFDDEGAMKSQSVKSLTVEEV 386


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 358 VTTSMLGASSITALTSHVSNLRS-GEQRTAEKNFGQQCSRNS 480
           +  S LGA+  +A +S +   R+  +  T++ NFG+QCSR++
Sbjct: 95  ILPSTLGANICSADSSDIIMERTIHKSTTSQGNFGEQCSRDN 136


>07_01_0004 +
           35300-35533,35617-35732,39044-39287,39451-40578,
           40657-40833
          Length = 632

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 522 YRTSLYKKAGWYRSGIPRALLAKVLFRRSL 433
           Y+TSL  + G ++ G+PR   AK+  R  L
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSCAKIAGRDKL 314


>02_01_0347 - 2493570-2493572,2493626-2493853
          Length = 76

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = -3

Query: 387 GGRAKHGRGHVKAVRCTNCARCVPKDQGHQKVRD*--EHRRSGGGQR--Y*RCLC 235
           GG     RG     RC        ++ G ++  +   E RR GGG+R    RC+C
Sbjct: 4   GGEGGTARGEDGEARCEEGGGATREEGGEERCEEEKAERRRGGGGERASKRRCIC 58


>09_02_0088 +
           4136698-4136857,4137530-4137558,4137992-4138954,
           4138973-4139301,4139398-4139485,4139766-4139864,
           4139935-4140245,4140532-4140685
          Length = 710

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 258 DRRRFYDVPNHELFDGLGPL-ARTARSLCISRL 353
           +R  FYD PN+E FD  G + +++ +SL +  +
Sbjct: 182 NRTLFYDEPNYEAFDDEGAMKSQSVKSLTVEEV 214


>01_01_0016 - 88825-90411
          Length = 528

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 440 RRKRTLANSARGIPDRYQPAF 502
           RR RT+AN+ARG   RY  AF
Sbjct: 225 RRLRTVANAARGTFRRYDAAF 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,168,634
Number of Sequences: 37544
Number of extensions: 373020
Number of successful extensions: 934
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)