Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G18
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   113   1e-25
AF016655-10|AAK31435.1|  112|Caenorhabditis elegans Hypothetical...    29   3.7  
Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL021469-3|CAA16290.2|  435|Caenorhabditis elegans Hypothetical ...    28   6.4  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  113 bits (273), Expect = 1e-25
 Identities = 51/69 (73%), Positives = 58/69 (84%)
 Frame = -1

Query: 320 CQRTKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSK 141
           C + KAIKKFV+RNIVEAAAVRDI DAS Y  + LPKLY KLHYC++CAIHSKVVRNRS+
Sbjct: 30  CPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHSKVVRNRSR 89

Query: 140 KDRRIRTPP 114
           + RR R PP
Sbjct: 90  EARRDRNPP 98



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -3

Query: 408 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDQGHQK 295
           MT KRRN GR K  RGHV  +RCTNC RC PKD+  +K
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKK 38


>AF016655-10|AAK31435.1|  112|Caenorhabditis elegans Hypothetical
           protein C17F4.2 protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 441 GGKELWPTVLEEFRTGTSLLF-CTNLFYXCH 530
           GGK +WP VLE  R+   L F   N+ Y  H
Sbjct: 54  GGKPIWPRVLERVRSTGELFFDDDNVAYVVH 84


>Z50739-3|CAA90603.2|  286|Caenorhabditis elegans Hypothetical
           protein F13D2.4 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 403 SHVSNLRSGEQRTAEKNFGQQ 465
           SH+++LRSGE+R  EK  G++
Sbjct: 262 SHLTHLRSGERRPPEKKLGKK 282


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 192 LLRVMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 67
           ++ V + P +S   ++ + QKN Y+S E    GH TS+ +A+
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411


>AL021469-3|CAA16290.2|  435|Caenorhabditis elegans Hypothetical
           protein Y116A8B.5 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 283 LITNFLMALVLWHAPRAVCASHGFNVT 363
           L+++FLM ++ W    AVC+ + +N T
Sbjct: 126 LLSSFLMTVLSWDRYMAVCSPNAYNAT 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,757,753
Number of Sequences: 27780
Number of extensions: 290859
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)