Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_G17
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.76
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 28 1.3
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 27 3.1
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 3.1
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 27 3.1
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 26 5.4
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 5.4
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 5.4
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 26 5.4
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 26 7.1
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 26 7.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 7.1
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 25 9.4
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 330 ECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNCTVDAANPGC 199
+C G+ YGQ C S++S AG N T+ A C
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESC 345
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -1
Query: 285 LPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGELYQKWNKPIAGVALGV--ACVEVVG 112
L +C S L FAG+ A PKI + +W P+ VA+ V AC+ +
Sbjct: 342 LTSACSSGNSFL--FAGSRSIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACLAFLN 399
Query: 111 A 109
A
Sbjct: 400 A 400
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 454 EEEDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHE---HYSPDDYEDPRDRQ 618
EE D+ + ND Q ED + + V +YR E E Y+ + Y+ ++RQ
Sbjct: 60 EEYDSAIDVRNDISQDEDDYKRTNDVNDSYRLVRQYEAPKELLNEYADESYDPMQERQ 117
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 432 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 322
ESI+ + V FK+R+D N E F EL +Q F C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 451 GEEEDANHHLHNDDHQQEDCVRDDH 525
G ++ +HH H+ DH D DH
Sbjct: 10 GSDDSTHHHTHDYDHHNHDHHGHDH 34
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 635 LSL*PWVQFI-RNATPIPTXSRPRSCIIEAHXAV 733
+SL WV+ I +N P P R+C++ H V
Sbjct: 341 VSLAQWVELILQNPDPTPAIHIARACLLAVHGVV 374
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +1
Query: 460 EDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRDRQQDGSSV 636
E+ N + Q+ DDH + SQE HEH D+ + + D S+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDHIHKYNEKCDHESI 563
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 601 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLLAGDHH 485
L SRR N + +V WS+ E +H + RNL + H
Sbjct: 12 LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 601 DPRDRQQDGSSVKSLTMGPVHQ 666
DP+D Q DGS K + + P H+
Sbjct: 122 DPQDLQADGSPAKFILVSPGHR 143
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +1
Query: 538 AYRSTASQERDHEHYSPDDYEDPRDRQQDGSSVKSLTMGPVHQERYSNPHXQQAE 702
++ S + + P D EDPR+ Q D +T G ++ Q+ E
Sbjct: 118 SFESDQQESHTGQANFPTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEE 172
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 539 RIAPQHPKNAITNITAPTTMKIHG 610
RI P P N + NIT P+T+ HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 542 IAP-QHPKNAITNITAPTTMKIHGTDSKMGLQLSL*PWVQFIRNATPIPTXSRPRSCII 715
IAP P A P + +GT + + ++L ++NA P+P S P ++
Sbjct: 240 IAPVPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPVPMTSSPAMAVV 298
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -1
Query: 393 RSDANADEAAEAVFSEL--QRQFECCGNTGAINYGQFT--LPESCCVKKSILSTFAG 235
R D+ +++ +AVF EL + +FE + + + ES +KKSI +TF G
Sbjct: 284 RKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGVDESTGLKKSIFTTFLG 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,895
Number of Sequences: 5004
Number of extensions: 53136
Number of successful extensions: 183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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