Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G16
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   163   1e-40
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    41   0.001
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    40   0.002
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    36   0.033
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    28   6.6  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  163 bits (397), Expect = 1e-40
 Identities = 76/91 (83%), Positives = 83/91 (91%)
 Frame = -3

Query: 718 RKELPPPKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLD 539
           ++ +   KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR IAEL IYPAVDPLD
Sbjct: 352 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLD 411

Query: 538 STSRIMDPNIIGAEHYNVARGVQKILQDYKS 446
           STSRIMDPN++G  HY++ARGVQKILQDYKS
Sbjct: 412 STSRIMDPNVVGQNHYDIARGVQKILQDYKS 442



 Score =  154 bits (373), Expect = 8e-38
 Identities = 76/101 (75%), Positives = 84/101 (83%)
 Frame = -1

Query: 471 RKFFRTTNPLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPL 292
           +K  +    LQDIIAILGMDELSEEDKLTV+RARKIQRFLSQPFQVAEVFTGH GK V L
Sbjct: 434 QKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHQGKFVSL 493

Query: 291 EETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKAETLAK 169
           EETI+GF+ IL G+ DHLPEVAFYM G I++V  KAE LAK
Sbjct: 494 EETIRGFTMILKGELDHLPEVAFYMQGGIDDVFKKAEELAK 534



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = -2

Query: 785 LLGRIPSAVGYQPTLATXHGTMQERITTTQE 693
           LLGRIPSAVGYQPTLAT  G+MQERITTT++
Sbjct: 330 LLGRIPSAVGYQPTLATDMGSMQERITTTKK 360


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = -3

Query: 697 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 521
           ++GSIT +  + +P +D+T P P  T    +    + + + +  IYP +D L S SR+M
Sbjct: 336 REGSITQIPILTMPNNDITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSRLM 394


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -3

Query: 697 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 521
           + GSIT +  + +P DD+T P P  T    +    + R +    IYP ++ L S SR+M
Sbjct: 324 RDGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSRLM 382


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -3

Query: 703 PPKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 524
           P ++GS+T V A+  P  D  DP  + T   +     L + +A+   +P+++ L S S  
Sbjct: 387 PEREGSVTIVGAVSPPGGDFADPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSEY 446

Query: 523 M 521
           M
Sbjct: 447 M 447


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
 Frame = -3

Query: 700 PKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 521
           PKK ++  + A  VP+   T  +  TTF   D+    +             PL  T R  
Sbjct: 12  PKKENLQIINASQVPSSQSTRQSGVTTFYDRDSYNGKTITYTSSAPKKKRTPLRFTRRFS 71

Query: 520 D-PNIIGAEHYNVARGVQKILQDYKSPAGHYCYF 422
             P  + A+  N+ R   ++LQ     +G   YF
Sbjct: 72  PAPKEVEAKLRNIDRSRDRVLQMSLDSSGPIHYF 105


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -1

Query: 585 EPLLNWVSTQLWILLTQHPVSWTPI-LLELSTTM-LHVEFRK 466
           + L N++  Q W++L  HP  +TP+   EL+  + L  EFRK
Sbjct: 20  QTLHNYIGEQ-WLMLFSHPADFTPVCTTELAELVKLAPEFRK 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,768,043
Number of Sequences: 27780
Number of extensions: 389281
Number of successful extensions: 942
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)