Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G13
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0315 + 16600387-16600557,16600652-16600801,16600874-166008...    74   1e-13
02_02_0438 + 10261084-10262061,10265049-10265690                       31   1.3  
10_08_0325 - 16752288-16752712,16755256-16757653                       29   4.1  
04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251     29   4.1  
11_01_0304 + 2280461-2281192                                           29   5.4  
08_01_0694 - 6136025-6136749,6137425-6137971                           29   5.4  
06_03_0569 + 22361917-22362291                                         28   7.2  
08_02_1136 - 24614236-24615207                                         28   9.5  
07_03_0950 + 22828787-22828982,22829091-22829164,22829512-228295...    28   9.5  

>09_04_0315 +
           16600387-16600557,16600652-16600801,16600874-16600897,
           16601519-16602694,16603120-16603266,16603477-16603752
          Length = 647

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 34/82 (41%), Positives = 49/82 (59%)
 Frame = -3

Query: 586 KXXNLPXKRDTTNFRFAWPRXSNSXTGDPSIKGAPTDFTXKINGIFVSVGAGFVVPMVGE 407
           K   +  K+  +N      +   S +  PS+KGAP+ F   I  +  S+GAGF+ P+VG 
Sbjct: 559 KQIEMYTKQGFSNLPICMAKTQYSFSHVPSMKGAPSGFVLPIRDVRASIGAGFIYPLVGT 618

Query: 406 ISKMPGLPTRPSIYDIDLNTKT 341
           +S MPGLPTRP  Y+ID++T T
Sbjct: 619 MSTMPGLPTRPCFYEIDVDTAT 640


>02_02_0438 + 10261084-10262061,10265049-10265690
          Length = 539

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 33  LHYNCVYIK*NT*IHGQSKYVLRQKKATCTISYY 134
           LHY C+ IK    +H  S  +LRQ +  C +  Y
Sbjct: 380 LHYLCMVIKETLRLHPASALILRQSRENCRVMGY 413


>10_08_0325 - 16752288-16752712,16755256-16757653
          Length = 940

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +2

Query: 368 DARSCRQSGHLRDLPDHGHHEAGAYRYEYSVDLXREVSGSSLDGGITGXGVRXSWPCKSE 547
           + R+  +  H   +  HG    G Y Y       R   G+ L GG  G G R  WP +  
Sbjct: 672 EVRALTRVRHRNIVKLHGFCAMGGYMYLVYELAERGSLGAVLYGGGGGGGCRFDWPARMR 731

Query: 548 ICR 556
             R
Sbjct: 732 AIR 734


>04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251
          Length = 364

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/36 (41%), Positives = 26/36 (72%)
 Frame = +2

Query: 191 IFY*ASRGLILVYLCVIRAVIRSEFNNSKIGINSKL 298
           +F  AS G IL+Y+ ++  ++ ++FNN K+ IN+KL
Sbjct: 309 VFNSASAG-ILIYMSLVD-LLATDFNNPKLQINTKL 342


>11_01_0304 + 2280461-2281192
          Length = 243

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 417 WSGRSRRCPDCRHDLASTILTSTQ 346
           W  RSR CP CRH L + +  +T+
Sbjct: 214 WLKRSRSCPLCRHLLPAVVPANTR 237


>08_01_0694 - 6136025-6136749,6137425-6137971
          Length = 423

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 532 PRXSNSXTGDPSIKGAPTDFTXKINGIFVSVGAGFVVP 419
           P  + S   +P+ + AP D       IF ++G GF++P
Sbjct: 18  PPPAGSEPDEPAARPAPADTLGVAYAIFFTLGTGFLLP 55


>06_03_0569 + 22361917-22362291
          Length = 124

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 429 SWCPWSGRSRRCPDCRHDL 373
           SWCPW+GR R     RH L
Sbjct: 56  SWCPWTGR-RHAQYLRHQL 73


>08_02_1136 - 24614236-24615207
          Length = 323

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 375 GRVGSPGIFEISPTMGTTKPAPT 443
           G++ SPG + ++P  GTT PAP+
Sbjct: 215 GQIFSPGSY-VTPKFGTTSPAPS 236


>07_03_0950 +
           22828787-22828982,22829091-22829164,22829512-22829570,
           22830148-22830487,22830623-22833376
          Length = 1140

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
 Frame = +2

Query: 209 RGLILVYLCVIRA---VIRSEFNNSKI--GINSKLLNSVNT*KRPSISPGFCVEVNIV-- 367
           RG  +V   +++A   V  SEF   K+  G  S +  ++++ K P  SPG  V+V     
Sbjct: 542 RGPSMVPRLLVKAPDFVSESEFACEKLHDGSFSPVDFALSSEKEPKTSPGLVVKVPEFPN 601

Query: 368 DARSCRQSGHLRDLPDH--GHHEAGAYRYEYSVDLXREVSGSSLDGGI 505
           D+    +     ++ DH  GH ++ A   E +VD  +  S  S+DG +
Sbjct: 602 DSDDELEEEKETEVGDHDDGHTKSDAALSESTVDSFKSKSHVSVDGAL 649


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,409,067
Number of Sequences: 37544
Number of extensions: 233866
Number of successful extensions: 556
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)