Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G10
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    28   1.7  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   2.3  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.3  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    27   3.0  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    27   3.0  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   9.1  

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 694  EEAXKLVRFFEKQDHCLKALDRACRVITAWLXQGLSHMK 578
            EE    V F+E  D  L  LDR   V   WL  GL++++
Sbjct: 886  EEMPSNVIFYETMDVSLSDLDRKRLVRLRWLVDGLANIE 924


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 203  PRSQADIDYELKVRKFLEMTKEDSDYEEKVRNFLA 99
            P +   ++  L+  K L+  K+D +Y  +VR+F A
Sbjct: 1360 PEAYLQLEELLQTSKILQFVKDDPNYVARVRDFYA 1394


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 260 PYGYQPPVQTADDIAAQPPPRSQADIDYELKVRK 159
           PY      Q +    AQ PP  Q+DI  +L+++K
Sbjct: 687 PYDLPSSSQISSSALAQLPPSMQSDIQQQLRLQK 720


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 251 YQPPVQTADDIAAQPPPRSQADID 180
           YQ PV T ++    PPP  + DI+
Sbjct: 10  YQKPVDTEEENDKNPPPLDEGDIE 33


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 693 RKLXNSLDFLKSKTTASKPLIEPAEL 616
           R+L  SLD LK+KT+   P++   EL
Sbjct: 456 RELLRSLDSLKAKTSKKDPIVRRNEL 481


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 22  SCSGIGGCCCWPSSCILRLR 81
           S SG+G   CW S C+  +R
Sbjct: 439 SISGLGTLFCWGSICLAHIR 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,220
Number of Sequences: 5004
Number of extensions: 33420
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)