Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G08
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...   179   4e-46
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    86   6e-18
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   5.4  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          26   7.1  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    26   7.1  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   9.4  

>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score =  179 bits (436), Expect = 4e-46
 Identities = 79/155 (50%), Positives = 112/155 (72%)
 Frame = -1

Query: 626 DFIIKAVAAACKRVPTVNSHWMESFIRQFSNVDVSVAVATPTGLITPILHNADSRGIIDL 447
           D +IKA  AA ++VP VN+ WM  FIRQ+ NVD+S+AVATP+GLITP++ N  + G+ ++
Sbjct: 313 DLVIKATTAALRQVPEVNAAWMGDFIRQYKNVDISMAVATPSGLITPVIRNTHALGLAEI 372

Query: 446 SKNMKQLAQKAKDGKLQPQEYQGGTVTVSNLGMYGITMFNAIINPPQSFIIACGGVQELV 267
           S   K   Q+A++ KL+P+EYQGGT T+SNLGM+ +  F AIINPPQ+ I+A G   + V
Sbjct: 373 STLAKDYGQRARNNKLKPEEYQGGTFTISNLGMFPVDQFTAIINPPQACILAVGTTVDTV 432

Query: 266 IPDQSEPNGFRTAKFVTFTASADHRVVDGAIGAQW 162
           +PD +   GF+ A  +  T S+DHRVVDGA+ A++
Sbjct: 433 VPDSTSEKGFKVAPIMKCTLSSDHRVVDGAMAARF 467


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
 Frame = -1

Query: 623 FIIKAVAAACKRVPTVNSHWM-----ESFI-RQFSNVDVSVAVATPTGLITPILHNADSR 462
           F  KA   A K++P +N         ++ + R F   D+S+AVATP GL+TP++ NA+S 
Sbjct: 281 FFSKACTQAMKQIPAINGSIEGEGKGDTLVYRDFC--DLSIAVATPKGLVTPVIRNAESM 338

Query: 461 GIIDLSKNMKQLAQKAKDGKLQPQEYQGGTVTVSNLGMYGITMFNAIINPPQSFIIACGG 282
            ++++   +  L  KA+ GKL  ++   GT T+SN G++G      IIN PQ+ ++    
Sbjct: 339 SLLEIESAIATLGSKARAGKLAIEDMASGTFTISNGGIFGSLYGTPIINLPQTAVLGLHA 398

Query: 281 VQE--LVIPDQSEPNGFRTAKFVTFTASADHRVVDGAIGAQWMKV 153
           ++E  +VI  Q  P   R   ++  T   DHR+VDG     ++++
Sbjct: 399 IKERPVVINGQVVP---RPMMYLALT--YDHRMVDGREAVTFLRL 438


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 590 RVPTVNSHWMESFIRQFSNV--DVSVAVATPTGLITPILHNADSRGIIDLSKNM 435
           R   ++ H +   +R + N+  D++V + +PT   TP++        + L+KN+
Sbjct: 405 RSKLMSLHLIYHILRTYMNILSDINVKIRSPTSTPTPLIDAVKQYICLALAKNV 458


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 497 LITPILHNADSRGIIDLSKNMKQL 426
           L  PI+HN DS+ I+D  K + +L
Sbjct: 125 LEVPIIHNGDSKTILDELKKVIEL 148


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 536 NVDVSVAVATPTGLITP--ILHNADSRGIIDLSKNMKQLAQKAKDGKLQPQEYQGGTV 369
           +VD    V  P  L+    ++     +  +DL  + K++A++    K  P +YQ GT+
Sbjct: 521 HVDPEAQVGGPIALVQDGDVIEINAVKNTLDLMVDEKEMARRRSVWKAPPLKYQQGTL 578


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 237 PNSQVRHVHSVGRPQGGGRSDRRS 166
           P + V H  S  RP+GGG   RRS
Sbjct: 238 PGTIVTHNTSNFRPEGGGHRHRRS 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,143
Number of Sequences: 5004
Number of extensions: 59864
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)