Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G07
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   2.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.0  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +1

Query: 295 THGPHAVEAAHQLIPVPGVTVYTFSVVEEILVHRHYTQRRSRSHDVVH 438
           T G  A E   Q  P P   +Y+  +V   ++ R        SH +++
Sbjct: 217 TPGYTAPEVIKQNRPTPAADIYSLGIVAWQMLFRKLPFAGLHSHTIIY 264


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 326 CAASTA*GPWVGERTPKINIGSWPTAGE 243
           CA   +  P+   R  +IN GSW  +GE
Sbjct: 169 CATDFSSWPYDTHRC-RINFGSWVHSGE 195


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 113 YCVITKNPHSFRLE 72
           YC  TKNP+  R++
Sbjct: 314 YCAATKNPNFDRMQ 327


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 504 IGNDCRRYRVGVPFSISKEEDIMYDIMT 421
           I  +CR     VPF  + + + + D++T
Sbjct: 443 INYNCRSLVASVPFFANADSNFVSDVVT 470


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 504 IGNDCRRYRVGVPFSISKEEDIMYDIMT 421
           I  +CR     VPF  + + + + D++T
Sbjct: 411 INYNCRSLVASVPFFANADSNFVSDVVT 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,147
Number of Sequences: 438
Number of extensions: 3073
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)