Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G06
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993     31   1.3  
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...    29   5.4  
11_06_0359 - 22683236-22683484,22684069-22684263,22684450-226847...    28   9.5  

>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
          Length = 678

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 479 SESERPDSLSETLNAFLTENCNYHYSNVSLLLD 577
           S SE+P S+  T++A L +  N H S+V + +D
Sbjct: 545 SRSEKPASIGSTIDAVLLQEGNTHTSDVEMSMD 577


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 434 SSSGAKRIFNTHFLDSESERPDSLSETLNAFLTENCNY 547
           S  G   +F+    D+E +     S T  A + +NCNY
Sbjct: 449 SDKGTVHVFSLRVKDAEEDAKKGESATAGAQVNDNCNY 486


>11_06_0359 -
           22683236-22683484,22684069-22684263,22684450-22684734,
           22686424-22686624,22688853-22689107,22689178-22689328,
           22689466-22689535,22690176-22690434,22691333-22691461
          Length = 597

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = +3

Query: 429 RTVQVGPSEFLTLIFST 479
           RTVQ GPSEFLT I  T
Sbjct: 354 RTVQFGPSEFLTEISGT 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,781,815
Number of Sequences: 37544
Number of extensions: 336460
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)