Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G04
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    52   7e-08
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    29   0.57 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.3  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    26   5.3  
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    25   9.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   9.3  

>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = -2

Query: 742  FKNGFVNLALPXFGFSEPIA-PSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLE 566
            +KNGF NLA+  F FS+PIA P      +    +WDR+ +  + TLQ+ +D+F+ E  LE
Sbjct: 883  YKNGFFNLAIGLFTFSDPIASPKMKVNGKEIDKIWDRYNLP-DCTLQELIDYFQKEEGLE 941

Query: 565  I 563
            +
Sbjct: 942  V 942



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 20/37 (54%), Positives = 29/37 (78%)
 Frame = -1

Query: 473  EVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 363
            E+V +++KKKLEP    LV E+CC+D +G DVEVP++
Sbjct: 972  ELVEQITKKKLEPFRKHLVLEICCDDANGEDVEVPFI 1008



 Score = 29.1 bits (62), Expect = 0.75
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 558  MLSQGVCMLYSFFMPKAKRLERLNL 484
            MLS GV +LY+ F P  K  ERL L
Sbjct: 944  MLSSGVSLLYANFQPPKKLAERLPL 968


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 397 SLQHNSKTNAFTCGSNFFLDTFVTTSXHWQVQSFQPLGFGHEERIKHAHTLRQH 558
           S+ HN+KT      ++   D  V  + H Q+Q  +     H+E ++ +  L  H
Sbjct: 272 SINHNNKTTLLAVHNSEERDYMVRQARHHQLQELENWSRKHDEDLEFSRELEYH 325


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -2

Query: 673  NTYNENKWTLWDRFEVKGEITLQ-QFLDHFKNEHKLEIXHVVSRCVHALFVLHAQSQAAG 497
            +T N +  TLWDRF   G +  Q + L   +  H++   ++  R  H          A  
Sbjct: 818  HTKNSDVPTLWDRFLALGNVRYQLKDLSDLEKLHQVTCSYISIRIPHKFIPFILIESAIN 877

Query: 496  TIEPA 482
            T++ A
Sbjct: 878  TVKAA 882


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 355 VYFTYGTSTSFPSSSLQHNSKTNAFTCGSNFFLDTFVT 468
           +YFT GT+  FP   L+HN  +  F C S   L   +T
Sbjct: 23  LYFTIGTN--FPHDELRHNLLSTLF-CSSMLHLSKGLT 57


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 403 QHNSKTNAFTCGSNFFLDTFVTTSXHWQVQSFQPLGFGHEERIKH 537
           Q+N  TNA +  S+ +L T  T +   +  SF+ L     +R+KH
Sbjct: 227 QNNGSTNASSLQSSNYLPTNPTLTHSNKAPSFEELA-ARLDRLKH 270


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 211 LQSKFQIITHSRFVSFVCSLSNDDVLHFYY-YFTS*KSFL-PNSI 83
           L S+F+    S F  F    S+DD  HFY   +T   + L PNS+
Sbjct: 475 LWSRFRFPKDSEFPEFFKCSSDDDNTHFYVNLYTGETTMLFPNSM 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,664
Number of Sequences: 5004
Number of extensions: 52081
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)