Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G02
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical
           protein F49C12.8 protein.
          Length = 410

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/54 (51%), Positives = 39/54 (72%)
 Frame = -1

Query: 228 AAGRLQCRIDAVAGCVVTGAGRGADADRSQLYQATIREGDLLLNRVKKLASVIN 67
           A G+LQCRIDAV G +        D+ ++ LY+A I++GD+LLNR++KLA VIN
Sbjct: 360 ATGQLQCRIDAVNGVIEVNH---RDS-KNHLYKAVIKDGDILLNRIQKLARVIN 409


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 74  TLASFLTRLRSKSPSRIVAWYSCDRSASAPRPA-PVTTQPATAS 202
           TLA   TR+ +  PSR +   +   +AS P P+ P+ T+PA A+
Sbjct: 317 TLAEAGTRIPAGMPSRSMTDVTLASTASTPTPSTPLPTRPAAAA 360


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 143  DRSASAPRPAPVTTQPAT 196
            D   S P+PAPVT  PAT
Sbjct: 2299 DMDTSTPKPAPVTRSPAT 2316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,954,544
Number of Sequences: 27780
Number of extensions: 94661
Number of successful extensions: 218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)