Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_G01
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   1.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.6  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    27   3.6  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   3.6  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    26   6.2  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   8.2  

>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 259 KLTPVVLETGNVLLIENHE-YGQSLKLDAHVDSYGD 155
           K+ P + E    + +E HE   +SLKL  HVD+  D
Sbjct: 461 KVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVND 496


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 234 VSSTTGVSFHR--WPFSFELLEPHAFLSPYSSTF 329
           +SS  GV F      + + LLE  AF SPY S+F
Sbjct: 577 ISSLQGVKFRSKLMAYFYPLLEHLAFASPYVSSF 610


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 466 YXSTLESXSNXXXYLXXXXPFWLG 537
           Y STLE+ ++    L    PFWLG
Sbjct: 820 YRSTLENMADDIDLLENIMPFWLG 843


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = -2

Query: 373 KYXILNILCTLKLDMNVEEYGDRKAWGSNNSNEKGHLWKLTPVVLETGNVLLIENHEY 200
           +Y +L     ++L+ +  ++    AW  N+SN K   WK    +L T  +  ++   Y
Sbjct: 593 RYFLLLRHVEMQLENSWVQHSKNSAWRLNSSNAKIEQWKRNSWLLRTRMLSFVQKIIY 650


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 280 NEKGHLWKLTPVVLETGNVLLIENHEYGQSLKLDAHVDS 164
           N   ++++ TPV   + +      H   ++++ DAH+DS
Sbjct: 541 NLTSNIYRWTPVSTNSTSKNSFNGHTINENMRYDAHMDS 579


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 198 PYSWFSMSKTLPVS 239
           P SW+S+SK +PVS
Sbjct: 34  PASWYSLSKKVPVS 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,208
Number of Sequences: 5004
Number of extensions: 36839
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)