Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_G01
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178... 33 0.30
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142... 32 0.53
07_03_0682 + 20667365-20667655 31 0.70
12_02_1101 - 26079214-26080368 29 2.8
12_02_0634 + 21416205-21416954 29 3.7
04_03_0642 + 18289461-18290897,18291586-18291666 29 3.7
09_02_0039 + 3293904-3294584 29 4.9
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 28 6.5
01_06_0948 - 33242219-33242530,33242632-33242782,33242874-332431... 28 6.5
10_08_0788 + 20553587-20553726,20554131-20554196,20554695-205549... 28 8.6
09_04_0506 - 18188785-18190599 28 8.6
06_03_0213 - 18063536-18063707,18063786-18064186,18064317-18064706 28 8.6
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 28 8.6
>10_08_0654 -
19616426-19616656,19617046-19617249,19617654-19617824,
19619617-19620411
Length = 466
Score = 32.7 bits (71), Expect = 0.30
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -1
Query: 392 NNKLLYKIXNTEYTMYPEAGHERRRVRRQESVGFQQLERERPSVEADACSAGDRQRLTHR 213
NN+ L + + Y EA R R RR+E Q +RER + EA+ + + R
Sbjct: 302 NNQRLREEQDAAYRAALEADQARERQRREE-----QEKREREAAEAER-KRKEEEEAQER 355
Query: 212 EPRVRXESEAGRARGQLRRPPALGKQ 135
+ E EA AR + + ALG +
Sbjct: 356 AAQEAAEKEAALARRRQEKAMALGAE 381
>11_06_0155 -
20712601-20713553,20713618-20714000,20714240-20714271,
20714315-20714571,20714699-20714724,20714894-20715081,
20715302-20715595,20715714-20715752,20715827-20715944,
20716076-20716157,20716610-20716668,20717156-20717221,
20717358-20717447,20718142-20718236
Length = 893
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 208 HEYGQSLKLDAHVDSYGDRLLWGNNGNVDGNPGYFGWV 95
H+ +LK DAH S+ +W VD P +GW+
Sbjct: 280 HKISTTLKKDAHARSFECGQIWALYSEVDKFPKLYGWI 317
>07_03_0682 + 20667365-20667655
Length = 96
Score = 31.5 bits (68), Expect = 0.70
Identities = 27/71 (38%), Positives = 32/71 (45%)
Frame = -1
Query: 335 GHERRRVRRQESVGFQQLERERPSVEADACSAGDRQRLTHREPRVRXESEAGRARGQLRR 156
G RRR R + G Q R RP VEA G R+R T R R + GR R R
Sbjct: 10 GQSRRRTRTSD--GGQSQTRRRPVVEARQ-GGGSRRRRTER--RWGRDGRPGRCRSGAER 64
Query: 155 PPALGKQWKRR 123
A+G +RR
Sbjct: 65 -EAVGADDERR 74
>12_02_1101 - 26079214-26080368
Length = 384
Score = 29.5 bits (63), Expect = 2.8
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -2
Query: 118 NPGYFGWVINAWQ*NFT*IQIPYQATINI 32
NP +FG+V AW+ + + +P++ ++N+
Sbjct: 107 NPYWFGYVAAAWRGGYWDVVVPWRGSVNV 135
>12_02_0634 + 21416205-21416954
Length = 249
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = -1
Query: 344 PEAGHERRRVRRQESVGFQQLERERPSVEADACSAGDRQRLTHREPRVRXESEAGRAR 171
PE RR+VR + F++ E + ++ R R R P +R GR R
Sbjct: 69 PEEMSTRRKVRPARATVFRRCSGEEEVIPGMRAASWSRGRWWRRRPALRGRGRGGRRR 126
>04_03_0642 + 18289461-18290897,18291586-18291666
Length = 505
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 310 DRKAWGSNNSNEKGHLWKLTPVVLETGNVLLIENHEYGQSLKLDAHVDSYGDRL 149
DR W S+ E GHL ++ VV + + LL E + Y +K+ A + D L
Sbjct: 6 DRLEWHSHKETEAGHLRQIKDVVYDAED-LLDEYNYYALKVKVKASKNLGQDHL 58
>09_02_0039 + 3293904-3294584
Length = 226
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = -1
Query: 338 AGHERRRVRRQESVGFQQLERERPSVEADACSAGDRQRLTHREPRVRXESEAGRARGQLR 159
+G RRR RR+ + E E ++ + G+ + + E E ARG
Sbjct: 19 SGARRRRQRRRSATATAVAEAETAALGDGNSARGEAEAPKDGDVMAAAE-EVEAARGGEA 77
Query: 158 RPPALGKQWKRRW 120
G WKRRW
Sbjct: 78 EVAGDGDGWKRRW 90
>02_05_0444 -
29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -1
Query: 326 RRRVRRQESVGFQQLERERPSVEADACSAGDRQRLTHREPRVRXESEAGRARGQLRRPPA 147
+RRVR SV +Q R RP+ E R T R R + + E G RG+ P+
Sbjct: 49 QRRVRAAPSVPAKQAARPRPAGE------NGRTTTTRRRRRRKQQGEEGEERGERGCVPS 102
Query: 146 L 144
+
Sbjct: 103 M 103
>01_06_0948 -
33242219-33242530,33242632-33242782,33242874-33243111,
33243196-33243298,33243323-33243406,33243640-33243815,
33243943-33244074,33248406-33248967,33249084-33249842
Length = 838
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = +1
Query: 154 GRRSCPRARPASDSXRTRGSL*VRRCRSPALQASASTDGLSRSSCWNPTL-SCLRTLLRS 330
GR C R+ P T G + V + P + S GLS C L +C T S
Sbjct: 336 GRAGCVRSTPLDCQNGTDGFVAVEHAKVPDTERSVVDLGLSLEQCRKACLMNCSCTAYAS 395
Query: 331 CPASG 345
SG
Sbjct: 396 ANVSG 400
>10_08_0788 +
20553587-20553726,20554131-20554196,20554695-20554926,
20555033-20555237,20555335-20555441
Length = 249
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 322 EEYGDRKAWGSNNSNEKGHLW-KLTPVVLETGNVLLIEN 209
+ Y D K W N N + H+W + P GN L+ N
Sbjct: 6 DSYIDGKGWEQENQNSRKHIWQRHGPDRERNGNSKLVVN 44
>09_04_0506 - 18188785-18190599
Length = 604
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -1
Query: 329 ERRRVRRQESVGFQQLERERPSVEADACSAGDRQRLTHREPRVRXESEAGRARGQLRRPP 150
ER R R +E + +RER D GD R RE + + GR+ G+ R
Sbjct: 532 ERERDRDRERERERDRDRERERYRDDRDRHGDYHRHGKRESDRNEDWDRGRSSGRRSRSR 591
Query: 149 ALGKQWKRR 123
+ +RR
Sbjct: 592 EVDHSKRRR 600
>06_03_0213 - 18063536-18063707,18063786-18064186,18064317-18064706
Length = 320
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = -1
Query: 320 RVRRQESVGFQQLERERPSVEADACSAGDRQRLTHREPRVRXESEAGRARGQLRRP 153
RV + + +RP+ A A DR R+T +P+ + G+ + L P
Sbjct: 100 RVTARPTTALGSRPPKRPASAPSAPPAQDRHRITLDKPKAKGRGRGGKVQASLLAP 155
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = -2
Query: 292 SNNSNEKGHLWKLTPVVLETGNVLLIENH--EYGQSLKLDAHVDSY 161
SN+ N HL L+P L T N L N LD V SY
Sbjct: 239 SNDHNSDSHLRSLSPYALVTRNTTLFSNQISPKESGFPLDGSVTSY 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,224,531
Number of Sequences: 37544
Number of extensions: 255771
Number of successful extensions: 1034
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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